YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350481, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	282 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350481, gi|....

Description	E-value	Query Range	Subject Range
gi\|78684225, gi\|... - gi\|78684225\|ref\|ZP_00849010.1\| MSHA biogenesis protein MshO [Shewanella sp. ANA-3], gi\|78507977\|gb\|E...	252.0	[0..1]	[282..1]
gi\|113886489, gi... - gi\|82494954\|ref\|ZP_00880533.1\| MSHA biogenesis protein MshO [Shewanella sp. MR-4], gi\|82407198\|gb\|EA...	250.0	[0..1]	[282..1]
gi\|78688962, gi\|... - gi\|78688962\|ref\|ZP_00853628.1\| MSHA biogenesis protein MshO [Shewanella sp. MR-7], gi\|78511645\|gb\|EA...	249.0	[0..1]	[282..1]
gi\|77811743, gi\|... - gi\|77813295\|ref\|ZP_00812573.1\| MSHA biogenesis protein MshO [Shewanella putrefaciens CN-32], gi\|7781...	244.0	[0..14]	[282..13]
gi\|120600390, gi... - gi\|82741321\|ref\|ZP_00904045.1\| MSHA biogenesis protein MshO [Shewanella sp. W3-18-1], gi\|82721330\|gb...	241.0	[0..11]	[282..10]
gi\|68520312, gi\|... - gi\|68541925\|ref\|ZP_00581663.1\| MSHA biogenesis protein MshO [Shewanella baltica OS155], gi\|68520312\|...	240.0	[0..1]	[282..1]
gi\|28899468, gi\|... - gi\|28899468\|ref\|NP_799073.1\| putative type IV prepilin, MshO [Vibrio parahaemolyticus RIMD 2210633],... gi\|28807704 - gi\|28807704\|dbj\|BAC60957.1\| putative type IV prepilin, MshO [Vibrio parahaemolyticus RIMD 2210633]	230.0	[0..13]	[282..3]
gi\|113908883, gi... - gi\|160873637\|ref\|YP_001552953.1\| MSHA biogenesis protein MshO [Shewanella baltica OS195], gi\|1608591...	222.0	[0..11]	[282..11]
gi\|27364831, gi\|... - gi\|27364831\|ref\|NP_760359.1\| Tfp pilus assembly protein PilW [Vibrio vulnificus CMCP6], gi\|27360976\|...	212.0	[0..12]	[282..2]
gi\|37681121, gi\|... - gi\|37681121\|ref\|NP_935730.1\| MSHA biogenesis protein MshO [Vibrio vulnificus YJ016], gi\|37199872\|dbj...	210.0	[0..13]	[282..4]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLSVKRKH QCSRGFTLVE MVTAILILGI LVVGVSSFII FGTRIFVESS SVDQVLSQSR  60
   61 FAIERITREL RSALPNSVRL NGNNLTYQCV EFVPIEASTT YLAMPIAPG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.154902
Match:	2hi2A
Description:	No description for 2hi2A was found.

Predicted Domain #2

Region A:
Residues: [110-178]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAALTGTVIL DNVASDIAVN QYAWIYPLTD SDVYNSARQK RAQINSISTA ANQVNLTFTA  60
   61 SARFAEASP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [179-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RQRIYFASAP VSYCFEKAPS SNELILTRYT GYGLTASQPV PADMGSGVLM AQGIANALTS  60
   61 SADLPLILTP SSLVNNAMVH LQPRFNVNGE TFQYRHQVQV INVP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.441	N/A	N/A	d.153.1	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
View	Download	0.368	N/A	N/A	a.40.1	Calponin-homology domain, CH-domain
View	Download	0.318	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.244	N/A	N/A	b.1.2	Fibronectin type III
View	Download	0.230	N/A	N/A	d.131.1	DNA clamp

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits