YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375581, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	488 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375581, gi|....

Description	E-value	Query Range	Subject Range
gi\|85059030, gi\|... - gi\|85059030\|ref\|YP_454732.1\| ribonuclease E [Sodalis glossinidius str. 'morsitans'], gi\|84779550\|dbj...	667.0	[0..3]	[485..2]
gi\|58427290 - gi\|58427290\|gb\|AAW76327.1\| ribonuclease E [Xanthomonas oryzae pv. oryzae KACC10331]	664.0	[0..3]	[485..7]
gi\|110833921, gi... - gi\|110833921\|ref\|YP_692780.1\| phosphoric diester hydrolase [Alcanivorax borkumensis SK2], gi\|1106470...	662.0	[0..3]	[485..2]
gi\|84624583, gi\|... - gi\|84624583\|ref\|YP_451955.1\| ribonuclease E [Xanthomonas oryzae pv. oryzae MAFF 311018], gi\|84368523...	661.0	[0..3]	[485..2]
gi\|92113716, gi\|... - gi\|92113716\|ref\|YP_573644.1\| ribonuclease E [Chromohalobacter salexigens DSM 3043], gi\|91796806\|gb\|A...	660.0	[0..3]	[485..2]
gi\|78036409, gi\|... - gi\|78047979\|ref\|YP_364154.1\| ribonuclease E [Xanthomonas campestris pv. vesicatoria str. 85-10], gi\|...	657.0	[0..3]	[485..2]
gi\|21108335, gi\|... - gi\|21242846\|ref\|NP_642428.1\| ribonuclease E [Xanthomonas axonopodis pv. citri str. 306], gi\|21108335...	657.0	[0..3]	[485..2]
gi\|51590083, gi\|... - gi\|51596801\|ref\|YP_070992.1\| ribonuclease E [Yersinia pseudotuberculosis IP 32953], gi\|51590083\|emb\|... Q669K5\|Q669K5_YERPS - Ribonuclease E - Yersinia pseudotuberculosis	655.0	[0..3]	[485..2]
gi\|77979989 - gi\|77979989\|ref\|ZP_00835404.1\| COG1530: Ribonucleases G and E [Yersinia intermedia ATCC 29909]	654.0	[0..5]	[485..1]

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Predicted Domain #1

Region A:
Residues: [1-488]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSELLINVT PSEARVALVE HGVLQEVHIE RRMKRGLVGN IYKGKISRVL PGMQAAFVDI  60
   61 GLDKAAFLHA SDIVPHTECV ADVEKGHFVV RDIAELVRQG QDIMVQVVKD PLGTKGARLT 120
  121 TDITLPSRYL VFMPGSSHIG VSQRIEQEEE RSRLKKITLP FVDEDGGFII RTAAEGVGED 180
  181 ELAQDAAFLR RVWSKVSERR QRRGVALLYQ DLALPVRIVR DFVGTELDRI QVDSRRTFAE 240
  241 LQAFAQEFMP EIADKIEHYS GPAPIFDLYD VENEIQRALG RKVELKSGGY LIIDQTEAMT 300
  301 TVDINTGAFV GHRNLEETIF NTNLEATQAI ARQLRLRNLG GIIIIDFIDM LSDEHKTRVL 360
  361 NSLNSALAKD RVKTNVSAFS GLGLVEMTRK RTRESLEHVL CGECPACKGT GSMKTVETVS 420
  421 YEIFREIIRL NRAYDADEFL LYCSPAVYNS LSGDESHLVA ELEVYIGKRI RLQNEPMYSQ 480
  481 HKYDVVMM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2bx2L
Description:	Catalytic domain of E. coli RNase E
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits