YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375541, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	297 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375541, gi|....

Description	E-value	Query Range	Subject Range
METF_ERWCA - (P71319) 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) METF_PECCC - 5,10-methylenetetrahydrofolate reductase OS=Pectobacterium carotovorum subsp. carotovorum GN=metF PE...	420.0	[0..1]	[294..1]
gi\|209401006, gi... - gi\|209401006\|ref\|YP_002273464.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 ... gi\|217322146, gi... - gi\|217325925\|ref\|ZP_03442009.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 s... gi\|195937592 - gi\|195937592\|ref\|ZP_03082974.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 s... gi\|208809405, gi... - gi\|208809405\|ref\|ZP_03251742.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 s... gi\|208812383, gi... - gi\|208812383\|ref\|ZP_03253712.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 s... gi\|208740595, gi... - gi\|208820472\|ref\|ZP_03260792.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 s... gi\|168775214, gi... - gi\|187769131\|gb\|EDU32975.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 str. ... gi\|254795947, gi... - gi\|254795947\|ref\|YP_003080784.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 ... gi\|168780869, gi... - gi\|189001450\|gb\|EDU70436.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 str. ... gi\|13364346, gi\|... - gi\|15834124\|ref\|NP_312897.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7], gi... gi\|189373373, gi... - gi\|189373373\|gb\|EDU91789.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 str. ... gi\|209752156, gi... - pir\|\|B86085 5,10-methylenetetrahydrofolate reductase [imported] - Escherichia coli (strain O157:H7, ... gi\|189378095, gi... - gi\|189378095\|gb\|EDU96511.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 str. ... gi\|13364346, gi\|... - gi\|15834124\|ref\|NP_312897.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 str.... gi\|188016841, gi... - gi\|188016841\|gb\|EDU54963.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 str. ... gi\|15804538, gi\|... - gi\|15804538\|ref\|NP_290578.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 EDL9... gi\|168755636, gi... - gi\|189357126\|gb\|EDU75545.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 str. ... gi\|168761666, gi... - gi\|189367866\|gb\|EDU86282.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 str. ... gi\|189362673, gi... - gi\|189362673\|gb\|EDU81092.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 str. ...	419.0	[0..1]	[294..1]
gi\|110807801, gi... - gi\|110807801\|ref\|YP_691321.1\| 5,10-methylenetetrahydrofolate reductase [Shigella flexneri 5 str. 840... gi\|124501308, gi... - gi\|124527606\|ref\|ZP_01699071.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli B], gi\|12... METF_SHIFL - 5,10-methylenetetrahydrofolate reductase OS=Shigella flexneri GN=metF PE=3 SV=1 gi\|24054522, gi\|... - gi\|24115235\|ref\|NP_709745.1\| 5,10-methylenetetrahydrofolate reductase [Shigella flexneri 2a str. 301... gi\|30043026, gi\|... - gi\|30064766\|ref\|NP_838937.1\| 5,10-methylenetetrahydrofolate reductase [Shigella flexneri 2a str. 245... EG10585 - 5,10-methylenetetrahydrofolate reductase / 5,10-Methylenetetrahydrofolate reductase EG10585 - 5,10-methylenetetrahydrofolate reductase / 5,10-Methylenetetrahydrofolate reductase gi\|169756974, gi... - gi\|170022046\|ref\|YP_001727000.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli ATCC 873... gi\|169891246, gi... - gi\|170083411\|ref\|YP_001732731.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli str. K-1... gi\|209914685, gi... - gi\|209921426\|ref\|YP_002295510.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli SE11], g... gi\|218358608, gi... - gi\|218551067\|ref\|YP_002384858.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia fergusonii AT... gi\|218556503, gi... - gi\|218556503\|ref\|YP_002389417.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli IAI1], g... gi\|188493110, gi... - gi\|75513872\|ref\|ZP_00736225.1\| COG0685: 5,10-methylenetetrahydrofolate reductase [Escherichia coli 5... gi\|74314446, gi\|... - gi\|74314446\|ref\|YP_312865.1\| 5,10-methylenetetrahydrofolate reductase [Shigella sonnei Ss046], gi\|73... gi\|192958604, gi... - gi\|75238387\|ref\|ZP_00722386.1\| COG0685: 5,10-methylenetetrahydrofolate reductase [Escherichia coli E... gi\|75258074, gi\|... - gi\|75258074\|ref\|ZP_00729535.1\| COG0685: 5,10-methylenetetrahydrofolate reductase [Escherichia coli E... gi\|85676119, gi\|... - gi\|89110088\|ref\|AP_003868.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli str. K-12 su... gi\|83586214, gi\|... - gi\|83586214\|ref\|ZP_00924850.1\| COG0685: 5,10-methylenetetrahydrofolate reductase [Escherichia coli 1... METF_ECOLI - 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) - Escherichia coli gi\|75176669, gi\|... - gi\|75176669\|ref\|ZP_00696797.1\| COG0685: 5,10-methylenetetrahydrofolate reductase [Shigella boydii BS... gi\|194418518, gi... - gi\|83569790\|ref\|ZP_00921239.1\| COG0685: 5,10-methylenetetrahydrofolate reductase [Shigella dysenteri... gi\|194429417, gi... - gi\|75209372\|ref\|ZP_00709608.1\| COG0685: 5,10-methylenetetrahydrofolate reductase [Escherichia coli B... gi\|190901030, gi... - gi\|75227810\|ref\|ZP_00714528.1\| COG0685: 5,10-methylenetetrahydrofolate reductase [Escherichia coli B... gi\|157079280, gi... - gi\|75188679\|ref\|ZP_00701946.1\| COG0685: 5,10-methylenetetrahydrofolate reductase [Escherichia coli E... gi\|157163418, gi... - gi\|75197814\|ref\|ZP_00707884.1\| COG0685: 5,10-methylenetetrahydrofolate reductase [Escherichia coli H... gi\|254163892, gi... - gi\|254163892\|ref\|YP_003047000.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli B str. R... gi\|253775419, gi... - gi\|254290643\|ref\|YP_003056391.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli BL21(DE3... gi\|242379478, gi... - gi\|251787205\|ref\|YP_003001509.1\| hypothetical protein B21_03776 [Escherichia coli BL21], gi\|24237947... gi\|238903007, gi... - gi\|238903007\|ref\|YP_002928803.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli BW2952],...	419.0	[0..1]	[294..1]
gi\|75765880, gi\|... - gi\|75765880\|pdb\|1ZRQ\|C Chain C, Escherichia Coli Methylenetetrahydrofolate Reductase (Reduced) Compl...	419.0	[0..1]	[294..1]
gi\|50123164, gi\|... - gi\|50123164\|ref\|YP_052331.1\| 5,10-methylenetetrahydrofolate reductase [Pectobacterium atrosepticum S...	418.0	[0..1]	[294..1]
gi\|82546293, gi\|... - gi\|82546293\|ref\|YP_410240.1\| 5,10-methylenetetrahydrofolate reductase [Shigella boydii Sb227], gi\|81...	418.0	[0..1]	[294..1]
gi\|81243012, gi\|... - gi\|82778864\|ref\|YP_405213.1\| 5,10-methylenetetrahydrofolate reductase [Shigella dysenteriae Sd197], ...	417.0	[0..1]	[294..1]
gi\|29139453, gi\|... - gi\|29143817\|ref\|NP_807159.1\| 5,10-methylenetetrahydrofolate reductase [Salmonella enterica subsp. en... gi\|224585920, gi... - gi\|224585920\|ref\|YP_002639719.1\| 5,10-methylenetetrahydrofolate reductase [Salmonella enterica subsp... gi\|213852568 - gi\|213852568\|ref\|ZP_03382100.1\| 5,10-methylenetetrahydrofolate reductase [Salmonella enterica subsp.... gi\|214003408 - gi\|214003408\|ref\|ZP_03414143.1\| 5,10-methylenetetrahydrofolate reductase [Salmonella enterica subsp.... gi\|213616085 - gi\|213616085\|ref\|ZP_03371911.1\| 5,10-methylenetetrahydrofolate reductase [Salmonella enterica subsp.... gi\|213648185 - gi\|213648185\|ref\|ZP_03378238.1\| 5,10-methylenetetrahydrofolate reductase [Salmonella enterica subsp.... gi\|213052149 - gi\|213052149\|ref\|ZP_03345027.1\| 5,10-methylenetetrahydrofolate reductase [Salmonella enterica subsp.... gi\|213427048 - gi\|213427048\|ref\|ZP_03359798.1\| 5,10-methylenetetrahydrofolate reductase [Salmonella enterica subsp.... gi\|197364878, gi... - gi\|197364878\|ref\|YP_002144515.1\| 5,10-methylenetetrahydrofolate reductase [Salmonella enterica subsp... gi\|204320753, gi... - gi\|204930349\|ref\|ZP_03221326.1\| 5,10-methylenetetrahydrofolate reductase [Salmonella enterica subsp.... gi\|205341831, gi... - gi\|205341831\|gb\|EDZ28595.1\| 5,10-methylenetetrahydrofolate reductase [Salmonella enterica subsp. ent... gi\|194710344, gi... - gi\|194734842\|ref\|YP_002117027.1\| 5,10-methylenetetrahydrofolate reductase [Salmonella enterica subsp... gi\|168262985, gi... - gi\|205348075\|gb\|EDZ34706.1\| 5,10-methylenetetrahydrofolate reductase [Salmonella enterica subsp. ent... gi\|168467455, gi... - gi\|195630149\|gb\|EDX48789.1\| 5,10-methylenetetrahydrofolate reductase [Salmonella enterica subsp. ent... gi\|161366610, gi... - gi\|161617246\|ref\|YP_001591211.1\| 5,10-methylenetetrahydrofolate reductase [Salmonella enterica subsp... gi\|168237734, gi... - gi\|197289383\|gb\|EDY28748.1\| 5,10-methylenetetrahydrofolate reductase [Salmonella enterica subsp. ent... gi\|62130200, gi\|... - gi\|62182567\|ref\|YP_218984.1\| 5,10-methylenetetrahydrofolate reductase [Salmonella enterica subsp. en... gi\|56415951, gi\|... - gi\|56415951\|ref\|YP_153026.1\| 5,10-methylenetetrahydrofolate reductase [Salmonella enterica subsp. en...	417.0	[0..1]	[294..1]
gi\|77960049 - gi\|77960049\|ref\|ZP_00823947.1\| COG0685: 5,10-methylenetetrahydrofolate reductase [Yersinia mollareti...	417.0	[0..1]	[294..1]

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Predicted Domain #1

Region A:
Residues: [1-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFHHAQHSH SLNQSLSELN GDINVSFEFF PPSTPEMEQI LWNSIRRLEP LNPKFVSVTY  60
   61 GANSGVRDRT HGVIERIQQE TNLVAAPHLT LVDASDEELL ELAKHYWKSG IRDIVALRGD 120
  121 LPAGSPKPTR FAVDLVRLLR SVADFDISVA AYPEVHPDAA NAQADLINLK RKIDAGASRA 180
  181 ITQFFFDVES YLRFRDRCVA AGIDVEIVPG ILPVTNFTQL KRFAGMTNVS LPSWLHKQFD 240
  241 GLENDAGTRQ LVGANVAIDM VKVLSREGVK DFHFYTLNRA ELTYAICHTL GVRPKAV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	118.0
Match:	1zp3A
Description:	E. coli Methylenetetrahydrofolate Reductase (oxidized)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits