YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350324, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	321 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350324, gi|....

Description	E-value	Query Range	Subject Range
gi\|77920304, gi\|... - gi\|77920304\|ref\|YP_358119.1\| magnesium and cobalt transport protein CorA [Pelobacter carbinolicus DS...	276.0	[0..2]	[321..41]
gi\|85544265, gi\|... - gi\|85544267\|pdb\|2BBJ\|F Chain F, Crystal Structure Of The Cora Mg2+ Transporter, gi\|85544266\|pdb\|2BBJ...	276.0	[0..9]	[321..37]
CORA_THEMA - Cobalt/magnesium transport protein CorA OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 ... CORA_THEMA - Magnesium transport protein CorA OS=Thermotoga maritima GN=corA PE=1 SV=1	275.0	[0..9]	[321..34]
gi\|25295831 - pir\|\|AG2319 hypothetical protein all4110 [imported] - Nostoc sp. (strain PCC 7120) gi\|17231602, gi\|... - gi\|17231602\|ref\|NP_488150.1\| hypothetical protein all4110 [Nostoc sp. PCC 7120], gi\|17133245\|dbj\|BAB...	273.0	[0..2]	[321..38]
gi\|78222404, gi\|... - gi\|78222404\|ref\|YP_384151.1\| magnesium/cobalt transporter CorA [Geobacter metallireducens GS-15], gi...	271.0	[0..5]	[321..41]
gi\|53764972, gi\|... - gi\|75907018\|ref\|YP_321314.1\| magnesium/cobalt transporter CorA [Anabaena variabilis ATCC 29413], gi\|...	271.0	[0..2]	[321..38]
gi\|21228742, gi\|... - gi\|21228742\|ref\|NP_634664.1\| magnesium/cobalt transporter CorA [Methanosarcina mazei Go1], gi\|209072...	269.0	[0..6]	[321..33]
gi\|67546254, gi\|... - gi\|67546254\|ref\|ZP_00424169.1\| Magnesium and cobalt transport protein CorA [Burkholderia vietnamiens...	269.0	[0..4]	[321..47]
gi\|221564892, gi... - gi\|222055603\|ref\|YP_002537965.1\| magnesium and cobalt transport protein CorA [Geobacter sp. FRC-32],...	269.0	[0..5]	[321..30]

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Predicted Domain #1

Region A:
Residues: [1-321]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHDGFIYSLV LSGEQAGSTL SPEQLDNWDP KDGLVWIHLR YRHKKARHWV LHCGLNKVES  60
   61 DALLAEDTRP RTVLAGEGVL LALRGVNLNP DSAPEDMVAV RIYADNQRII STCERELQSV 120
  121 KDVAGSIMAG TGPTTTGDFI VAICERLTIR KVDFIDTLEE QLLELEEQVV SGNVKDLRTD 180
  181 IAELRRQTVA LRRYLGPQKE AFAKMLSEQF VLFNEPEKLK MRETTNNLIR TIEDLDALRD 240
  241 RANVTQEELL SQQSEQLNKR LYFLSLVSVI FLPLGFLTGL LGVNIGGIPG ADNNFAFTSF 300
  301 CIILVSLVAL QMVILYRFKW L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.221849
Match:	2bbjA
Description:	Crystal structure of the CorA Mg2+ transporter
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits