YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375405, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	468 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375405, gi|....

Description	E-value	Query Range	Subject Range
gi\|81243686, gi\|... - gi\|82779538\|ref\|YP_405887.1\| replicative DNA helicase [Shigella dysenteriae Sd197], gi\|81243686\|gb\|A...	458.0	[0..1]	[468..1]
gi\|85676804, gi\|... - gi\|89110773\|ref\|AP_004553.1\| replicative DNA helicase [Escherichia coli str. K-12 substr. W3110], gi... gi\|169891344, gi... - gi\|170083509\|ref\|YP_001732829.1\| replicative DNA helicase [Escherichia coli str. K-12 substr. DH10B]... gi\|170021950, gi... - gi\|170021950\|ref\|YP_001726904.1\| replicative DNA helicase [Escherichia coli ATCC 8739], gi\|169756878... gi\|74314546, gi\|... - gi\|74314546\|ref\|YP_312965.1\| replicative DNA helicase [Shigella sonnei Ss046], gi\|73858023\|gb\|AAZ907... gi\|209914795, gi... - gi\|209921536\|ref\|YP_002295620.1\| replicative DNA helicase [Escherichia coli SE11], gi\|209914795\|dbj\|... gi\|81247790, gi\|... - gi\|82546379\|ref\|YP_410326.1\| replicative DNA helicase [Shigella boydii Sb227], gi\|81247790\|gb\|ABB684... gi\|170520838, gi... - gi\|170683120\|ref\|YP_001746441.1\| replicative DNA helicase [Escherichia coli SMS-3-5], gi\|170520838\|g... gi\|218363378, gi... - gi\|218556609\|ref\|YP_002389523.1\| replicative DNA helicase [Escherichia coli IAI1], gi\|218363378\|emb\|... gi\|110644387, gi... - gi\|110644387\|ref\|YP_672117.1\| replicative DNA helicase [Escherichia coli 536], gi\|110345979\|gb\|ABG72... gi\|215267459, gi... - gi\|215489387\|ref\|YP_002331818.1\| replicative DNA helicase [Escherichia coli O127:H6 str. E2348/69], ... gi\|218354492, gi... - gi\|218697760\|ref\|YP_002405427.1\| replicative DNA helicase [Escherichia coli 55989], gi\|218354492\|emb... gi\|218429899, gi... - gi\|218692335\|ref\|YP_002400547.1\| replicative DNA helicase [Escherichia coli ED1a], gi\|218429899\|emb\|... gi\|194415228, gi... - gi\|75211980\|ref\|ZP_00712035.1\| COG0305: Replicative DNA helicase [Escherichia coli B171], gi\|1944268... gi\|191168801, gi... - gi\|75227995\|ref\|ZP_00714686.1\| COG0305: Replicative DNA helicase [Escherichia coli B7A], gi\|19116880... gi\|187429016, gi... - gi\|75179601\|ref\|ZP_00699605.1\| COG0305: Replicative DNA helicase [Shigella boydii BS512], gi\|1877320... gi\|157156324, gi... - gi\|75188776\|ref\|ZP_00702043.1\| COG0305: Replicative DNA helicase [Escherichia coli E24377A], gi\|1571... DNAB_SHIFL - Replicative DNA helicase OS=Shigella flexneri GN=dnaB PE=3 SV=1 gi\|192931383, gi... - gi\|75258970\|ref\|ZP_00730338.1\| COG0305: Replicative DNA helicase [Escherichia coli E22], gi\|19306312... gi\|24054664, gi\|... - gi\|24115358\|ref\|NP_709868.1\| replicative DNA helicase [Shigella flexneri 2a str. 301], gi\|24054664\|g... gi\|75514811, gi\|... - gi\|75514811\|ref\|ZP_00737040.1\| COG0305: Replicative DNA helicase [Escherichia coli 53638], gi\|188495... gi\|30064641, gi\|... - gi\|30064641\|ref\|NP_838812.1\| replicative DNA helicase [Shigella flexneri 2a str. 2457T], gi\|30042900... gi\|192958908, gi... - gi\|75238588\|ref\|ZP_00722577.1\| COG0305: Replicative DNA helicase [Escherichia coli E110019], gi\|1930... EG10236 - replicative DNA helicase / Replicative DNA helicase; DNA-dependent ATPase involved in DNA synthesis;... gi\|191171963, gi... - gi\|75241080\|ref\|ZP_00724954.1\| COG0305: Replicative DNA helicase [Escherichia coli F11], gi\|19117196... gi\|238863449, gi... - gi\|238903161\|ref\|YP_002928957.1\| replicative DNA helicase [Escherichia coli BW2952], gi\|238863449\|gb... gi\|251787307, gi... - gi\|251787307\|ref\|YP_003001611.1\| hypothetical protein B21_03884 [Escherichia coli BL21], gi\|24237958... gi\|253326364, gi... - gi\|254290738\|ref\|YP_003056486.1\| replicative DNA helicase [Escherichia coli BL21(DE3)], gi\|253980045... gi\|254037049, gi... - gi\|254037049\|ref\|ZP_04871126.1\| replicative DNA helicase [Escherichia sp. 1_1_43], gi\|226840155\|gb\|E... gi\|254163988, gi... - gi\|254163988\|ref\|YP_003047096.1\| replicative DNA helicase [Escherichia coli B str. REL606], gi\|25397... gi\|194437201, gi... - gi\|83587175\|ref\|ZP_00925804.1\| COG0305: Replicative DNA helicase [Escherichia coli 101-1], gi\|194437... EG10236 - replicative DNA helicase / Replicative DNA helicase; DNA-dependent ATPase involved in DNA synthesis;... gi\|195183271 - gi\|195183271\|dbj\|BAG66812.1\| replicative DNA helicase [Escherichia coli O111:H-] DNAB_ECOLI - Replicative DNA helicase (EC 3.6.1.-) - Escherichia coli gi\|124527691, gi... - gi\|124527691\|ref\|ZP_01699126.1\| replicative DNA helicase [Escherichia coli B], gi\|124501134\|gb\|EAY48...	458.0	[0..1]	[468..1]
gi\|189374952, gi... - gi\|189374952\|gb\|EDU93368.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC869], gi\|16878... gi\|15804644, gi\|... - gi\|15804644\|ref\|NP_290685.1\| replicative DNA helicase [Escherichia coli O157:H7 EDL933], gi\|12519003... gi\|168798288, gi... - gi\|189379073\|gb\|EDU97489.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC508], gi\|16879... gi\|15834288, gi\|... - gi\|15834288\|ref\|NP_313061.1\| replicative DNA helicase [Escherichia coli O157:H7 str. Sakai], gi\|1336... gi\|195935835 - gi\|195935835\|ref\|ZP_03081217.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4024] gi\|208728580, gi... - gi\|208808779\|ref\|ZP_03251116.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4206], gi\|... gi\|168760898, gi... - gi\|189368529\|gb\|EDU86945.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4501], gi\|1687... gi\|168766309, gi... - gi\|189364196\|gb\|EDU82615.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4486], gi\|1687... gi\|187769938, gi... - gi\|187769938\|gb\|EDU33782.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4196], gi\|1687... gi\|189001628, gi... - gi\|189001628\|gb\|EDU70614.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4076], gi\|1687... gi\|168748103, gi... - gi\|188017417\|gb\|EDU55539.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4113], gi\|1687... gi\|168755219, gi... - gi\|189357516\|gb\|EDU75935.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4401], gi\|1687... gi\|208734730, gi... - gi\|208813453\|ref\|ZP_03254782.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4045], gi\|... gi\|254595471, gi... - gi\|254796071\|ref\|YP_003080908.1\| replicative DNA helicase [Escherichia coli O157:H7 str. TW14359], g... gi\|208738898, gi... - gi\|208818775\|ref\|ZP_03259095.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4042], gi\|... DNAB_ECO57 - Replicative DNA helicase OS=Escherichia coli O157:H7 GN=dnaB PE=3 SV=1 gi\|209398031, gi... - gi\|209398031\|ref\|YP_002273592.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4115], gi... gi\|209751276, gi... - pir\|\|F86098 replicative DNA helicase, part of primosome [imported] - Escherichia coli (strain O157:H... gi\|217325653, gi... - gi\|217325653\|ref\|ZP_03441737.1\| replicative DNA helicase [Escherichia coli O157:H7 str. TW14588], gi...	457.0	[0..1]	[468..1]
gi\|26250838, gi\|... - gi\|26250838\|ref\|NP_756878.1\| replicative DNA helicase [Escherichia coli CFT073], gi\|26111269\|gb\|AAN8... gi\|91075152, gi\|... - gi\|91213578\|ref\|YP_543564.1\| replicative DNA helicase [Escherichia coli UTI89], gi\|91075152\|gb\|ABE10... gi\|237703612, gi... - gi\|237703612\|ref\|ZP_04534093.1\| replicative DNA helicase [Escherichia sp. 3_2_53FAA], gi\|226901524\|g...	457.0	[0..1]	[468..13]
gi\|157163521, gi... - gi\|75197910\|ref\|ZP_00707980.1\| COG0305: Replicative DNA helicase [Escherichia coli HS], gi\|157163521...	457.0	[0..1]	[468..1]
gi\|218367894, gi... - gi\|218561125\|ref\|YP_002394038.1\| replicative DNA helicase [Escherichia coli S88], gi\|218367894\|emb\|C... DNAB_ECOL6 - Replicative DNA helicase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=dnaB PE=3... DNAB_ECOL6 - Replicative DNA helicase OS=Escherichia coli O6 GN=dnaB PE=3 SV=2 gi\|227886938, gi... - gi\|227886938\|ref\|ZP_04004743.1\| replicative DNA helicase [Escherichia coli 83972], gi\|227836079\|gb\|E... gi\|117626322, gi... - gi\|117626322\|ref\|YP_859645.1\| replicative DNA helicase [Escherichia coli APEC O1], gi\|115515446\|gb\|A...	456.0	[0..1]	[468..1]
gi\|82403551, gi\|... - gi\|82498465\|ref\|ZP_00883961.1\| DnaB helicase [Shewanella sp. MR-4], gi\|82403551\|gb\|EAP44276.1\| DnaB ... gi\|114046201, gi... - gi\|114046201\|ref\|YP_736751.1\| primary replicative DNA helicase [Shewanella sp. MR-7], gi\|113887643\|g...	455.0	[0..1]	[468..1]
gi\|25299883 - pir\|\|AB0040 replicative DNA helicase (EC 3.6.1.-) [imported] - Yersinia pestis (strain CO92) gi\|89104138, gi\|... - gi\|89104138\|ref\|ZP_01176690.1\| COG0305: Replicative DNA helicase [Yersinia pestis biovar Orientalis ... gi\|108809955, gi... - gi\|108809955\|ref\|YP_653871.1\| replicative DNA helicase [Yersinia pestis Antiqua], gi\|108781868\|gb\|AB... Q66FG2\|Q66FG2_YERPS - Replicative DNA helicase - Yersinia pseudotuberculosis gi\|45435185, gi\|... - gi\|45440329\|ref\|NP_991868.1\| replicative DNA helicase [Yersinia pestis biovar Microtus str. 91001], ... gi\|22124491, gi\|... - gi\|22124491\|ref\|NP_667914.1\| replicative DNA helicase [Yersinia pestis KIM], gi\|21957283\|gb\|AAM84165... gi\|15978420, gi\|... - gi\|218927525\|ref\|YP_002345400.1\| replicative DNA helicase [Yersinia pestis CO92], gi\|16120657\|ref\|NP... gi\|51594729, gi\|... - gi\|51594729\|ref\|YP_068920.1\| replicative DNA helicase [Yersinia pseudotuberculosis IP 32953], gi\|515... gi\|165921307, gi... - gi\|165926684\|ref\|ZP_02222516.1\| replicative DNA helicase [Yersinia pestis biovar Orientalis str. F19... gi\|166213911, gi... - gi\|166213911\|ref\|ZP_02239946.1\| replicative DNA helicase [Yersinia pestis biovar Antiqua str. B42003... gi\|165990514, gi... - gi\|166010424\|ref\|ZP_02231322.1\| replicative DNA helicase [Yersinia pestis biovar Antiqua str. E19790... gi\|229679765, gi... - gi\|229903995\|ref\|ZP_04519108.1\| replicative DNA helicase [Yersinia pestis Nepal516], gi\|229679765\|gb... gi\|166963161, gi... - gi\|167419167\|ref\|ZP_02310920.1\| replicative DNA helicase [Yersinia pestis biovar Orientalis str. MG0... gi\|167402462, gi... - gi\|167402462\|ref\|ZP_02307919.1\| replicative DNA helicase [Yersinia pestis biovar Antiqua str. UG05-0... gi\|167054844, gi... - gi\|167426133\|ref\|ZP_02317886.1\| replicative DNA helicase [Yersinia pestis biovar Mediaevalis str. K1... gi\|229706261, gi... - gi\|229836577\|ref\|ZP_04456743.1\| replicative DNA helicase [Yersinia pestis Pestoides A], gi\|229706261... gi\|229840185, gi... - gi\|229840185\|ref\|ZP_04460344.1\| replicative DNA helicase [Yersinia pestis biovar Orientalis str. PEX... gi\|229690577, gi... - gi\|229842267\|ref\|ZP_04462422.1\| replicative DNA helicase [Yersinia pestis biovar Orientalis str. Ind... gi\|150260634, gi... - gi\|150260634\|ref\|ZP_01917362.1\| replicative DNA helicase [Yersinia pestis CA88-4125], gi\|149290042\|g... gi\|145212595, gi... - gi\|145600899\|ref\|YP_001164975.1\| replicative DNA helicase [Yersinia pestis Pestoides F], gi\|14521259... gi\|162354692, gi... - gi\|77634671\|ref\|ZP_00796767.1\| COG0305: Replicative DNA helicase [Yersinia pestis Angola], gi\|162421... gi\|117675189, gi... - gi\|77631320\|ref\|ZP_00793906.1\| COG0305: Replicative DNA helicase [Yersinia pseudotuberculosis IP 317...	454.0	[0..1]	[468..1]
gi\|120560302, gi... - gi\|120600209\|ref\|YP_964783.1\| replicative DNA helicase [Shewanella sp. W3-18-1], gi\|120560302\|gb\|ABM... gi\|124507779, gi... - gi\|124549608\|ref\|ZP_01707747.1\| replicative DNA helicase [Shewanella putrefaciens 200], gi\|124507779... gi\|145563553, gi... - gi\|77816654\|ref\|ZP_00815824.1\| DnaB helicase [Shewanella putrefaciens CN-32], gi\|77808395\|gb\|EAO9284...	454.0	[0..1]	[468..1]
gi\|91713887, gi\|... - gi\|91791885\|ref\|YP_561536.1\| replicative DNA helicase [Shewanella denitrificans OS217], gi\|91713887\|...	453.0	[0..1]	[468..1]

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Predicted Domain #1

Region A:
Residues: [1-468]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQQGAFKPK SKPRDLQVDS LKLPPHSIEA EQSVLGGLML DADAWDKVAE TVVKEDFYSR  60
   61 SHRMIFAAMH RLVETGQPID LITVSEQLEL ENQLEEAGGF AYLGEIAKNT PSAGNIVSYA 120
  121 EIVRERAVVR EMIRVAHEIA DAGYNPEGRD SSALLDLAES KVFKIAEQRT NANEGPEGIK 180
  181 TILEKTVDKI EQLYNNPHNG VTGVSSGFSD LDKMTAGFQS GDLIIVAARP SMGKTTFAMN 240
  241 LCEQAAMNED KPVLIFSLEM PSEQIMMRML ASLGRVDQTK IRTGQLDDED WARVSSTMGI 300
  301 MLEQGKMYID DGSGLTPTEV RSRARRIARE HGGLSMIMVD YLQLMQVPAL SDNRTLEIAE 360
  361 ISRSLKALAK ELEIPVIALS QLNRSLEQRA DKRPVNSDLR ESGSIEQDAD LIMFIYRDEV 420
  421 YNNDSPDKGT AEIIIGKQRN GPIGRVRLTF QGQFSRFDNY AGPQFEED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	104.0
Match:	2q6tA
Description:	No description for 2q6tA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits