YRC Public Data Repository - Protein Structure Prediction

Protein:	ALR_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	358 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ALR_SHEON.

Description	E-value	Query Range	Subject Range
gi\|75854366, gi\|... - gi\|75854366\|ref\|ZP_00762064.1\| COG0787: Alanine racemase [Vibrio sp. Ex25], gi\|254230408\|ref\|ZP_0492...	366.0	[0..7]	[355..14]
gi\|91227270, gi\|... - gi\|91227270\|ref\|ZP_01261695.1\| alanine racemase [Vibrio alginolyticus 12G01], gi\|91188664\|gb\|EAS7495...	365.0	[0..7]	[355..6]
gi\|75822390, gi\|... - gi\|75822390\|ref\|ZP_00752026.1\| COG0787: Alanine racemase [Vibrio cholerae RC385], gi\|116215659\|ref\|Z...	364.0	[0..5]	[355..11]
gi\|116187943, gi... - gi\|75828931\|ref\|ZP_00758259.1\| COG0787: Alanine racemase [Vibrio cholerae MO10], gi\|116187943\|ref\|ZP... gi\|75817960, gi\|... - gi\|75817960\|ref\|ZP_00748204.1\| COG0787: Alanine racemase [Vibrio cholerae V51], gi\|116218793\|ref\|ZP_...	364.0	[0..5]	[355..11]
gi\|121590967, gi... - gi\|121590967\|ref\|ZP_01678287.1\| alanine racemase, biosynthetic [Vibrio cholerae 2740-80], gi\|1215471... gi\|153224528, gi... - gi\|153224528\|ref\|ZP_01954486.1\| alanine racemase, biosynthetic [Vibrio cholerae MAK 757], gi\|1241175... gi\|197752194, gi... - gi\|254286204\|ref\|ZP_04961163.1\| alanine racemase, biosynthetic [Vibrio cholerae AM-19226], gi\|197752... gi\|229358013, gi... - gi\|229504955\|ref\|ZP_04394466.1\| alanine racemase biosynthetic [Vibrio cholerae BX 330286], gi\|229358... gi\|124114169, gi... - gi\|153216658\|ref\|ZP_01950565.1\| alanine racemase, biosynthetic [Vibrio cholerae 1587], gi\|124114169\|... gi\|153830458, gi... - gi\|153830458\|ref\|ZP_01983125.1\| alanine racemase, biosynthetic [Vibrio cholerae 623-39], gi\|14887406... gi\|227008472, gi... - gi\|227080584\|ref\|YP_002809135.1\| alanine racemase, biosynthetic [Vibrio cholerae M66-2], gi\|22700847... gi\|254227117, gi... - gi\|254227117\|ref\|ZP_04920668.1\| alanine racemase, biosynthetic [Vibrio cholerae V51], gi\|225354220\|r... gi\|153827276, gi... - gi\|153827276\|ref\|ZP_01979943.1\| alanine racemase, biosynthetic [Vibrio cholerae MZO-2], gi\|149738824... gi\|229526947, gi... - gi\|229526947\|ref\|ZP_04416344.1\| alanine racemase biosynthetic [Vibrio cholerae 12129(1)], gi\|2293355... gi\|254847388, gi... - gi\|254851683\|ref\|ZP_05241033.1\| alanine racemase [Vibrio cholerae MO10], gi\|254847388\|gb\|EET25802.1\|... gi\|229346922, gi... - gi\|229516019\|ref\|ZP_04405470.1\| alanine racemase biosynthetic [Vibrio cholerae RC9], gi\|229346922\|gb... gi\|229354375, gi... - gi\|229508607\|ref\|ZP_04398103.1\| alanine racemase biosynthetic [Vibrio cholerae B33], gi\|229354375\|gb... gi\|229606347, gi... - gi\|229606347\|ref\|YP_002876995.1\| alanine racemase biosynthetic [Vibrio cholerae MJ-1236], gi\|2293690... gi\|9654790, gi\|1... - gi\|9654790\|gb\|AAF93545.1\| alanine racemase, biosynthetic [Vibrio cholerae O1 biovar El Tor str. N169... gi\|11268983 - gi\|11268983\|pir\|\|H82329 alanine racemase, biosynthetic VC0372 [imported] - Vibrio cholerae (strain N...	364.0	[0..5]	[355..18]
gi\|75814268 - gi\|75814268\|ref\|ZP_00744882.1\| COG0787: Alanine racemase [Vibrio cholerae V52] gi\|75828354 - gi\|75828354\|ref\|ZP_00757789.1\| COG0787: Alanine racemase [Vibrio cholerae O395]	364.0	[0..5]	[355..11]
gi\|124549609, gi... - gi\|124549609\|ref\|ZP_01707748.1\| alanine racemase [Shewanella putrefaciens 200], gi\|124507780\|gb\|EAY5... ALR_SHEPC - Alanine racemase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=alr PE=3 SV=1	364.0	[0..1]	[358..1]
ALR1_VIBCH - Alanine racemase 1 OS=Vibrio cholerae GN=alr1 PE=3 SV=2 ALR1_VIBCH - Alanine racemase 1 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=alr1 ...	363.0	[0..5]	[355..4]
ALR_SHESW - Alanine racemase OS=Shewanella sp. (strain W3-18-1) GN=alr PE=3 SV=1	362.0	[0..1]	[358..1]
ALR_SHESR - Alanine racemase OS=Shewanella sp. (strain MR-7) GN=alr PE=3 SV=1	361.0	[0..1]	[358..1]

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Predicted Domain #1

Region A:
Residues: [1-358]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPFPRAEIS SSALQNNLAV LRQQASSSQV MAVVKANGYG HGLLNVAKCL NNADGFGLAR  60
   61 LEEALELRAG SVKARLLLLE GFFRSTDLPL LVEHDIDTVV HHESQIEMLE QATLSKPVTV 120
  121 WLKVDSGMHR LGVTPEQFSA VYARLTACKN VAKPIHLMTH FACADEPDNH YTQVQMQTFN 180
  181 QLTADLPGFR TLANSAGALY WPKSQGDWIR PGIAMYGVSP VTGDCGANHG LIPAMNLVSR 240
  241 LIAVREHKAN QPVGYGCYWT AKQDTRLGVV AIGYGDGYPR NAPEGTPVWI NGRRVPIVGR 300
  301 VSMDMLTVDL GHDATDQVGD DVLLWGQALP VEEVAEHIGT IAYELVTKLT PRVAVCLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	90.045757
Match:	1rcqA
Description:	The 1.45 A crystal structure of alanine racemase from a pathogenic bacterium, Pseudomonas aeruginosa, contains both internal and external aldimine forms
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits