YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375386, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	391 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375386, gi|....

Description	E-value	Query Range	Subject Range
gi\|73670238, gi\|... - gi\|73670238\|ref\|YP_306253.1\| L-sorbosone dehydrogenase [Methanosarcina barkeri str. Fusaro], gi\|7239...	260.0	[0..5]	[376..1]
gi\|20907515, gi\|... - gi\|21228975\|ref\|NP_634897.1\| L-sorbosone dehydrogenase [Methanosarcina mazei Go1], gi\|20907515\|gb\|AA...	255.0	[0..5]	[376..1]
gi\|126179456, gi... - gi\|126179456\|ref\|YP_001047421.1\| L-sorbosone dehydrogenase [Methanoculleus marisnigri JR1], gi\|12586...	247.0	[0..8]	[375..1]
gi\|39982065, gi\|... - gi\|39995303\|ref\|NP_951254.1\| L-sorbosone dehydrogenase, putative [Geobacter sulfurreducens PCA], gi\|...	246.0	[0..30]	[385..21]
gi\|113525694, gi... - gi\|113866918\|ref\|YP_725407.1\| glucose/sorbosone dehydrogenase [Ralstonia eutropha H16], gi\|113525694...	242.0	[0..5]	[376..5]
gi\|83727492, gi\|... - gi\|83745802\|ref\|ZP_00942859.1\| L-sorbosone dehydrogenase (FAD) [Ralstonia solanacearum UW551], gi\|83...	242.0	[0..21]	[377..81]
gi\|78686025, gi\|... - gi\|78686025\|ref\|ZP_00850797.1\| L-sorbosone dehydrogenase, putative [Shewanella sp. ANA-3], gi\|785061...	240.0	[0..1]	[381..1]
gi\|119768674, gi... - gi\|68547662\|ref\|ZP_00587194.1\| L-sorbosone dehydrogenase, putative [Shewanella amazonensis SB2B], gi...	240.0	[0..7]	[389..7]
gi\|17225206 - gi\|17225206\|gb\|AAL37299.1\|AF323583_1 beta transducin-like protein HET-E2C*4 [Podospora anserina]	239.0	[0..14]	[379..878]
gi\|186686617, gi... - gi\|23124439\|ref\|ZP_00106428.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668661...	239.0	[0..5]	[382..779]

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Predicted Domain #1

Region A:
Residues: [1-391]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYIKTNNYK YLTVFSAYWT LLVSLALLPF QAAIAGSQSI MITVSKGFGL SLYASDLGDA  60
   61 KQIAMGSNGT LFVGSNKSGT VHALVDSNQD GRVDKRYVIA KGLESPDAIA FHNGDLFVAT 120
  121 ENRIVRFIDI EQRLRRPSRP KEIYSDLPES DKKSALAMKF GPDGRLYVSI GAPCNVCEAS 180
  181 SPHSSIIAIN VDTGASEQIA LGIRNVTGFD WSPQDGKLWF ADQGRDWMGD NLPPDEINRV 240
  241 DVMGSHYGFP YLHASSVVEP AYEKPQNLKI NVPVYELPAH VAPTGLAFYR GKQFPQIYHN 300
  301 QLFVAENGSW NRSSKVGYQI VMLKLENQQV VSRETVVSFL DGEFPVARPY ALLSGEDGAM 360
  361 YISDDLKGNL YRLFYRDGDN TEEPQELEEN E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	2gnqA
Description:	No description for 2gnqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits