YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350215, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	758 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350215, gi|....

Description	E-value	Query Range	Subject Range
gi\|153839549, gi... - gi\|153839549\|ref\|ZP_01992216.1\| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ3810], gi\|149746930... gi\|28806924, gi\|... - gi\|28898706\|ref\|NP_798311.1\| DNA gyrase, subunit A [Vibrio parahaemolyticus RIMD 2210633], gi\|288069... gi\|28806924 - gi\|28806924\|dbj\|BAC60195.1\| DNA gyrase, subunit A [Vibrio parahaemolyticus RIMD 2210633]	935.0	[0..1]	[757..1]
gi\|4886573, gi\|1... - gi\|4886573\|dbj\|BAA77788.1\| DNA gyrase [Vibrio parahaemolyticus], pir\|\|T43767 DNA topoisomerase (ATP-...	934.0	[0..1]	[757..1]
gi\|90581243, gi\|... - gi\|90581243\|ref\|ZP_01237041.1\| putative DNA topoisomerase (ATP-hydrolyzing) [Vibrio angustum S14], g...	933.0	[0..1]	[757..1]
gi\|54309620, gi\|... - gi\|54309620\|ref\|YP_130640.1\| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium profundum ...	933.0	[0..1]	[757..1]
gi\|90412222, gi\|... - gi\|90412222\|ref\|ZP_01220228.1\| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium profundu...	932.0	[0..1]	[757..1]
gi\|89074076, gi\|... - gi\|89074076\|ref\|ZP_01160577.1\| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium sp. SKA3...	929.0	[0..1]	[757..1]
gi\|83724218, gi\|... - gi\|83749097\|ref\|ZP_00946102.1\| DNA gyrase subunit A [Ralstonia solanacearum UW551], gi\|83724218\|gb\|E...	927.0	[0..14]	[758..141]
gi\|2731385 - gi\|2731385\|gb\|AAB95117.1\| DNA gyrase [Serratia marcescens]	925.0	[0..1]	[758..1]
gi\|73760122 - gi\|73760122\|dbj\|BAE19968.1\| DNA gyrase subunit A [Photobacterium damselae subsp. piscicida]	923.0	[0..1]	[757..1]
gi\|221086918, gi... - gi\|221086918\|ref\|ZP_03556458.1\| DNA gyrase, A subunit [Geobacillus sp. Y412MC61], gi\|220708971\|gb\|EE... gi\|229328386, gi... - gi\|229500723\|ref\|ZP_04394368.1\| DNA gyrase, A subunit [Geobacillus sp. Y412MC52], gi\|229328386\|gb\|EE... gi\|56418541, gi\|... - gi\|56418541\|ref\|YP_145859.1\| DNA gyrase subunit A [Geobacillus kaustophilus HTA426], gi\|56378383\|dbj...	922.0	[0..1]	[758..1]

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Predicted Domain #1

Region A:
Residues: [1-758]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDAIKLSLD GVEQMPLRRF TEEAYLNYSM YVIMDRALPH IGDGLKPVQR RIIYAMSELG  60
   61 LSAQSKHKKS ARTVGDVLGK YHPHGDSACY EAMVLMAQPF SYRYPLVDGQ GNWGAPDDPK 120
  121 SFAAMRYTEA RLSKFSEVLL SELGQGTVEW GANFDGTLKE PKVLPARLPH ILLNGITGIA 180
  181 VGMATDIPPH NVRELVNACV ALLDEPKLDL EQLMAYVPGP DYPTEAEIIT PAADIAKIYE 240
  241 TGRGSLKARA VYSVEAGEIV ITALPHQASS GKILELIAAQ MQAKKLPMVA DLRDESDHEN 300
  301 PVRLVIVPRS NRVDCDQLMA HLFATTDLEK SFRVNLNVLG LDGRPRVKGL KDLLTEWLEF 360
  361 RVDTVRRRLE YRLDKVLARL HILEALMIAF LNIDEVIEII RFHDEPKAEL MARFNLTDKQ 420
  421 AEAILELKLR HLAKLEEFKI KAEQDELEAE REKLEQLLGS ERRLKTLIKK ELIQDGETYG 480
  481 DDRRSPIVER HESKALTEQE LTPSEPVTVV LSDKGWVRSA KGHDIDAESL SYKAGDQYLC 540
  541 SAMGRSNQAA VFIDSSGRAF ATDSHSLPSA RSQGEPITTR FNMAPGETMQ HVILGEDEQC 600
  601 FLLATDAGYG FICTFNDMVS RNKAGKALLS LPTNAKSLPP KPIDRNREMS ILAITNEGRM 660
  661 LLFSLEALPQ LSKGKGNKII GIPSERAKNR EELMTHLQLV PADTSVTLWA GKRKLTLKPS 720
  721 DLEHYRGERG RRGAKLPRGL QRVDSMELGE GAEPIPSI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1zvuA
Description:	Structure of the full-length E. coli ParC subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits