YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350212, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	543 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350212, gi|....

Description	E-value	Query Range	Subject Range
ETR2_PELHO - Ethylene receptor 2 OS=Pelargonium hortorum GN=ETR2 PE=2 SV=1	264.0	[0..14]	[543..52]
gi\|145411509 - gi\|145411509\|gb\|ABP68413.1\| putative ethylene receptor [Cucumis melo] ETR1_CUCMN - Ethylene receptor 1 OS=Cucumis melo var. cantalupensis GN=ETR1 PE=2 SV=1	263.0	[0..14]	[531..52]
gi\|7547007, gi\|1... - gi\|7547007\|gb\|AAF63755.1\|AF243474_1 putative ethylene receptor [Vitis vinifera], gi\|157357089\|emb\|CA...	263.0	[0..14]	[531..52]
gi\|82471109 - gi\|82471109\|gb\|ABB77560.1\| ETR1 type ethylene receptor [Ziziphus jujuba]	261.0	[0..14]	[543..52]
ETR1_PRUPE - Ethylene receptor OS=Prunus persica GN=ETR1 PE=2 SV=1	260.0	[0..14]	[531..52]
gi\|56900932 - gi\|56900932\|gb\|AAW31759.1\| ethylene receptor [Hevea brasiliensis]	260.0	[0..14]	[543..52]
gi\|58293963 - gi\|58293963\|gb\|AAW69924.1\| ethylene receptor [Malus x domestica]	260.0	[0..14]	[543..52]
ETR1_CUCSA - Ethylene receptor 1 OS=Cucumis sativus GN=ETR1 PE=2 SV=1	260.0	[0..14]	[531..52]
gi\|15131529 - gi\|15131529\|emb\|CAC48384.1\| ethylene receptor [Fragaria x ananassa]	259.0	[0..14]	[543..52]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTFFSQFIK SPIGRHLTLS IVLFSSLITL ITTAYQLIND YRGDVSRIDR VFSNIEKANL  60
   61 DVLAASIWVI DERLINTQLN GLIQLPDINY ISIKD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [96-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSGQSWNAGN SKPTHTLNKI FPLVYKSPTD NINVGTLEVQ VDMDAIYQRL YDKAILILLS  60
   61 NGIKTFLVAG FILFLVWYNI TKHLDKLSNY CKRINLDADF EPLQFERKEK ADEFKQVADA 120
  121 INSMQGQLRN SFEALKSSKA ELQTALEDRE RLLKLERSYK EELARQVKER TQE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.16
Match:	2f95B
Description:	M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [269-543]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LEQSLAALKR AQQVLVEQEK MAALGGLVSG VAHEINTPIG ICLTAASAQL SHIEELIELI  60
   61 HSEQATLDEI NAILDEYQQS CELIVRNITK ASSLIQKFKT IAIDRSHEEH QCINLQTQLK 120
  121 QIVESSLLMH PTLKAQTQLH VDPSLNIQTN ASLLNQIVSN ILSNAYTHAF QDREDNQILI 180
  181 STNIEQEVVN ISIQNNGIAI PPEIAEHMFE PFFTTNRSKG GTGLGLSAAF NAATLLKGTM 240
  241 SYQADSQLGG AQFNVRIPLN RCDLPKIGTH HDFTN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.30103
Match:	2c2aA
Description:	Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits