YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350200, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	680 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350200, gi|....

Description	E-value	Query Range	Subject Range
CDC48_SOYBN - Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1	358.0	[0..1]	[663..21]
CD48D_ARATH - Cell division control protein 48 homolog D OS=Arabidopsis thaliana GN=CDC48D PE=1 SV=1	358.0	[0..5]	[663..14]
gi\|48477528, gi\|... - gi\|48477528\|ref\|YP_023234.1\| cell division cycle protein 48 [Picrophilus torridus DSM 9790], gi\|4843...	357.0	[0..32]	[677..24]
gi\|18159541, gi\|... - gi\|18312110\|ref\|NP_558777.1\| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum aerophilum str....	356.0	[0..124]	[679..112]
gi\|49527427 - gi\|49527427\|emb\|CAG61067.1\| unnamed protein product [Candida glabrata] gi\|50291367, gi\|... - gi\|50291367\|ref\|XP_448116.1\| unnamed protein product [Candida glabrata], gi\|49527427\|emb\|CAG61067.1\|...	355.0	[0..54]	[671..58]
VAT_THEAC - VCP-like ATPase OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / ... VAT_THEAC - VCP-like ATPase OS=Thermoplasma acidophilum GN=vat PE=1 SV=1	354.0	[0..32]	[679..27]
gi\|215704352, gi... - gi\|215704711\|dbj\|BAG94339.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|215704637\|dbj... gi\|125542437 - gi\|125542437\|gb\|EAY88576.1\| hypothetical protein OsI_10049 [Oryza sativa Indica Group]	353.0	[0..39]	[663..54]

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Predicted Domain #1

Region A:
Residues: [1-680]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKRAKSPRK WRANHCHYLA SQLSEALMLA AITVDMVVPS SILGAITGEQ IEPFLRLSLE  60
   61 DASLKLPSKD RAPLNTATVK HNAQFLGQLF GLMPQMQAVL EFLIVINANA GLRELTELLI 120
  121 DDDFDVLERM LQAKTTLDLE VILSQLAVFE RYQLIAEATL DAPYRLLFPN VLVSILVSQK 180
  181 LTSAVDFLAP MLSKSPEAQF SLSQFGHVNT DLLANYLAAI TKKPSVGVNI LLYGKAGTGK 240
  241 TELARTLAKT IKRNLLEVQS QQLIGSQYRS DSITKATSIR LVHLSLLQGL LAHSNDSLLL 300
  301 VDECEALFVQ ADEQYSKEQL MQALEQNPVP AIWITNHVGL LEPSFIRRFK LVMEVPVPDE 360
  361 PFAYTINEHL LTPLKVSQDY HLLLAEKPNV TPAMVGNAAH VAMTLKFKGA KAEVLIDEVI 420
  421 DATLEACGEE APPPKYQGEL AFDSNMVNFK VSDDAASVTT AEMLASINHA VKQAMPIRVM 480
  481 LSGPPGTGKT AWVHHLAETH GFELMHIKCS DVLSKYVGDS EQNIARLFRD AHRQQKLMLI 540
  541 DEVDSLLSKR DSAQALHEVQ LVNELISQLE CNTLPVFAAT NALASIDSAV MRRFDFKLAC 600
  601 DYLTSDQRQA LYRQVLGIQR LNHEEVSTLN SLNQLTPGDF AILARRQRFE PKRDHRATAL 660
  661 ALLTTENSRK QGQPRIGFIR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	90.69897
Match:	1oz4A
Description:	VCP/p97
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits