YRC Public Data Repository - Protein Structure Prediction

Protein:	MODC_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	361 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MODC_SHEON.

Description	E-value	Query Range	Subject Range
gi\|18894131, gi\|... - gi\|18978305\|ref\|NP_579662.1\| putative sugar transport ATP-hydrolyzing [Pyrococcus furiosus DSM 3638]...	372.0	[0..4]	[356..7]
gi\|7442503 - pir\|\|H71241 probable multiple sugar-binding transport ATP-binding protein - Pyrococcus horikoshii gi\|3256580, gi\|1... - gi\|3256580\|dbj\|BAA29263.1\| 375aa long hypothetical multiple sugar-binding transport ATP-binding prot...	371.0	[0..4]	[355..10]
gi\|221236171, gi... - gi\|221236171\|ref\|YP_002518608.1\| spermidine/putrescine transport ATP-binding protein potA [Caulobact... gi\|25384753 - pir\|\|D87637 hypothetical protein CC3134 [imported] - Caulobacter crescentus gi\|16127364, gi\|... - gi\|16127364\|ref\|NP_421928.1\| spermidine/putrescine ABC transporter, ATP-binding protein [Caulobacter...	369.0	[0..1]	[349..14]
gi\|83592353, gi\|... - gi\|83592353\|ref\|YP_426105.1\| spermidine/putrescine ABC transporter ATP-binding subunit [Rhodospirill... gi\|48765175 - ref\|ZP_00269726.1\| COG3842: ABC-type spermidine/putrescine transport systems, ATPase components [Rho...	365.0	[0..1]	[354..30]
gi\|57641710, gi\|... - gi\|57641710\|ref\|YP_184188.1\| ABC-type maltdextrin transport system, ATPase component [Thermococcus k...	365.0	[0..4]	[355..7]
gi\|88861148, gi\|... - gi\|88861148\|ref\|ZP_01135782.1\| ABC-type spermidine/putrescine transport systems [Pseudoalteromonas t...	365.0	[0..5]	[352..16]
gi\|167350338, gi... - gi\|167647908\|ref\|YP_001685571.1\| spermidine/putrescine ABC transporter ATPase subunit [Caulobacter s...	363.0	[0..1]	[349..9]
gi\|15644032, gi\|... - gi\|4981834\|gb\|AAD36351.1\|AE001783_2 sugar ABC transporter, ATP-binding protein [Thermotoga maritima ... gi\|7442605 - pir\|\|H72272 sugar ABC transporter, ATP-binding protein - Thermotoga maritima (strain MSB8)	363.0	[0..5]	[356..10]
gi\|89349159, gi\|... - gi\|89362113\|ref\|ZP_01199924.1\| Spermidine/putrescine ABC transporter ATP-binding subunit [Xanthobact...	362.0	[0..1]	[351..29]

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Predicted Domain #1

Region A:
Residues: [1-361]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTINIEKQL GQLQLKVNTQ LPLRGVTAVF GRSGAGKTSL VNLLGGLTTP DKGEISLGDT  60
   61 LLFKHKTVNL PPEKRRIGYV FQEARLFPHY SVKGNLTYGM RHQSPALFDR IVQLLGLEKH 120
  121 LRSYPSTLSG GEKQRVAIGR ALLTSPQMLL MDEPLASLDL PRKRELLPYL QTLAQELKLP 180
  181 IIYVSHSLDE ILQLADHMLV LHQGHIIAQG PLTDVWNSEQ MRPWVPLQEL SSLICARIAD 240
  241 RHPDYPMTRL VMDDGNQLWV SGQLPQTHKQ VKVRIQANHV SVCTAEPKRS SIRNVLKGKI 300
  301 KELYPSDNDE QVQLKIALGN DELWANITLW ACDELQLVAG KEIYAQIKGV TMTQMDIAQS 360
  361 H

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	103.0
Match:	2d62A
Description:	No description for 2d62A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits