YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375310, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	327 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375310, gi|....

Description	E-value	Query Range	Subject Range
GPDA_LEPIC - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae... GPDA_LEPIC - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae...	197.0	[0..15]	[327..1]
GPDA_LEPIN - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae... GPDA_LEPIN - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans GN=gpsA PE=3 SV=1	195.0	[0..15]	[327..1]
GPDA_LEPBL - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira borgpetersenii serovar Hardjo-bovis (stra...	192.0	[0..15]	[325..1]
GPDA_LEPBJ - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira borgpetersenii serovar Hardjo-bovis (stra...	192.0	[0..15]	[325..1]
gi\|238856808, gi... - gi\|238856808\|ref\|ZP_04647068.1\| glycerol-3-phosphate dehydrogenase [Enterococcus faecalis TUSoD Ef11... gi\|229305101, gi... - gi\|229549832\|ref\|ZP_04438557.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Enterococcus f... GPDA_ENTFA - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN... gi\|227073624, gi... - gi\|227518935\|ref\|ZP_03948984.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Enterococcus f... GPDA_ENTFA - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Enterococcus faecalis GN=gpsA PE=3 SV=1 gi\|229309209, gi... - gi\|229545641\|ref\|ZP_04434366.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Enterococcus f... gi\|227553554, gi... - gi\|227553554\|ref\|ZP_03983603.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Enterococcus f...	189.0	[0..14]	[326..2]
GPDA_CARHZ - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-1...	188.0	[0..16]	[327..5]
gi\|89086259, gi\|... - gi\|89099129\|ref\|ZP_01172008.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Bacillus sp. NR...	186.0	[0..10]	[317..1]
gi\|149950477, gi... - gi\|77683607\|ref\|ZP_00799054.1\| Glycerol-3-phosphate dehydrogenase (NAD(P)+) [Alkaliphilus metallired...	185.0	[0..17]	[326..6]
gi\|221319444 - gi\|221319444\|ref\|ZP_03600738.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Bacillus subti... gi\|221314522 - gi\|221314522\|ref\|ZP_03596327.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Bacillus subti... GPDA_BACSU - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Bacillus subtilis (strain 168) GN=gpsA PE=3 SV=2 gi\|221323720 - gi\|221323720\|ref\|ZP_03605014.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Bacillus subti... GPDA_BACSU - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Bacillus subtilis GN=gpsA PE=3 SV=2	185.0	[0..15]	[326..2]
gi\|48823891 - ref\|ZP_00285354.1\| COG0240: Glycerol-3-phosphate dehydrogenase [Enterococcus faecium] gi\|69249418, gi\|... - gi\|69249418\|ref\|ZP_00604967.1\| Glycerol-3-phosphate dehydrogenase (NAD(P)+) [Enterococcus faecium DO...	185.0	[0..16]	[327..4]

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Predicted Domain #1

Region A:
Residues: [1-327]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGQSKTAAI APPASEIAIL GAGAVGQLIC HQLHSAGLAV GLIARESFAS NIEATHWQDL  60
   61 VFSPLLLNNT NTESVSYRVP KLDIESKSAQ QIKLLIVCVK AYQVLDAISP LLDKLSPQCH 120
  121 ILLLHNGMGP HLTLAPRLNG RGLSLGTTSQ GVLRQSCWQV KQTGQGLTQF GHFTGPELPQ 180
  181 ALRERLLHAI PNSEWVEAII PSLWQKLAVN AAINPLTALH QCPNGTLAQA QFSKTIATIL 240
  241 DELVEVAAHD GVELDRQRLE ERVYRVIELT AANFSSMHQD VAHHRPTEID QINGYIGDRA 300
  301 NAHGLSAATN AQMVQSIKQL SAIPPVQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.0
Match:	2ew2A
Description:	Crystal Structure of the Putative 2-Dehydropantoate 2-Reductase from Enterococcus faecalis
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits