YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375298, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	465 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375298, gi|....

Description	E-value	Query Range	Subject Range
gi\|78510438, gi\|... - gi\|78690159\|ref\|ZP_00854810.1\| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate l...	366.0	[0..1]	[464..1]
gi\|82496942, gi\|... - gi\|82496942\|ref\|ZP_00882504.1\| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate l...	364.0	[0..1]	[464..1]
gi\|120560233, gi... - gi\|82740557\|ref\|ZP_00903295.1\| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate l...	364.0	[0..1]	[464..1]
gi\|78506220, gi\|... - gi\|78686084\|ref\|ZP_00850856.1\| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate l...	363.0	[0..1]	[464..1]
gi\|160862341, gi... - gi\|160876819\|ref\|YP_001556135.1\| UDP-N-acetylmuramate [Shewanella baltica OS195], gi\|160862341\|gb\|AB...	362.0	[0..1]	[464..1]
gi\|153817994, gi... - gi\|153817994\|ref\|ZP_01970661.1\| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ... gi\|254851084, gi... - gi\|254851084\|ref\|ZP_05240434.1\| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ... gi\|9657126, gi\|1... - gi\|9657126\|gb\|AAF95683.1\| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase... gi\|11356306 - pir\|\|H82063 UDP-N-acetylmuramate-L-alanyl-gamma-D-glutamyl-meso-diaminop imelate ligase (EC 6.3.2.-)... gi\|126519528, gi... - gi\|229509672\|ref\|ZP_04399153.1\| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ... gi\|229354908, gi... - gi\|229507403\|ref\|ZP_04396908.1\| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ... gi\|229516797, gi... - gi\|229516797\|ref\|ZP_04406243.1\| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ... gi\|121547864, gi... - gi\|121587894\|ref\|ZP_01677650.1\| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ... gi\|229606910, gi... - gi\|229606910\|ref\|YP_002877558.1\| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate...	361.0	[0..1]	[457..1]
gi\|145563622, gi... - gi\|77813032\|ref\|ZP_00812313.1\| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate l...	360.0	[0..1]	[464..1]
gi\|84387794, gi\|... - gi\|84387794\|ref\|ZP_00990809.1\| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate l...	359.0	[0..1]	[458..1]
gi\|126172967, gi... - gi\|68540814\|ref\|ZP_00580563.1\| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate l...	358.0	[0..1]	[462..1]
gi\|85834632, gi\|... - gi\|86147593\|ref\|ZP_01065903.1\| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate l...	358.0	[0..1]	[458..1]

Back

Predicted Domain #1

Region A:
Residues: [1-465]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHVHILGICG TFMGGLALLA RAKGHRVTGS DANVYPPMST QLEEQGIELI QGFDPSQLGD  60
   61 AGSYPDIVVI GNAMSRGNPC VEAVLNLGIP YTSGPQFLVD HILPERWVLA VSGTHGKTST 120
  121 SSMLAWILED CGYQPGFLIG GVPQNFGVSA RLGESAFFVV EADEYDSAFF DKRSKFVHYH 180
  181 PRTLVINNLE FDHADIFADL AAIQKQFHHQ IRTVPGQGKV IWPADSHAVK QTIDMGCWSE 240
  241 QETYHSSEVT KGWHAKALSD DCHEFEVFFD GQSQGVLDWA LIGQHNIENA VMAIAAARHV 300
  301 GVAPSAAIDA LARFVPPKRR LELLDTVNGV SVYDDFAHHP TAIATTIKGM RAKVGQTKIT 360
  361 IVLEPRSNTM KSGVHKDTLA HSMLQADEAF LYQADTIDWN MKEAMEAAVI PVTVLHQIDD 420
  421 VVAKVAASAK PGDTIVVMSN GGFGGLHKKL LAALAVSPQL VEQAH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.154902
Match:	1gqqA
Description:	UDP-N-acetylmuramate-alanine ligase MurC
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits