YRC Public Data Repository - Protein Structure Prediction

Protein:	SPEE_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	574 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPEE_SHEON.

Description	E-value	Query Range	Subject Range
gi\|117919281, gi... - gi\|78686283\|ref\|ZP_00851052.1\| Spermidine synthase [Shewanella sp. ANA-3], gi\|78505908\|gb\|EAP19432.1...	364.0	[0..1]	[574..1]
gi\|68517420, gi\|... - gi\|68544878\|ref\|ZP_00584458.1\| Spermine synthase [Shewanella baltica OS155], gi\|68517420\|gb\|EAN41101...	363.0	[0..1]	[574..1]
gi\|68531220, gi\|... - gi\|94312392\|ref\|YP_585602.1\| spermidine synthase [Ralstonia metallidurans CH34], gi\|93356244\|gb\|ABF1...	363.0	[0..20]	[566..2]
gi\|114046366, gi... - gi\|114046366\|ref\|YP_736916.1\| spermidine synthase [Shewanella sp. MR-7], gi\|113887808\|gb\|ABI41859.1\|...	363.0	[0..1]	[574..1]
gi\|160874044, gi... - gi\|160874044\|ref\|YP_001553360.1\| spermidine synthase [Shewanella baltica OS195], gi\|160859566\|gb\|ABX...	362.0	[0..1]	[574..1]
gi\|113971447, gi... - gi\|82497662\|ref\|ZP_00883192.1\| Spermidine synthase [Shewanella sp. MR-4], gi\|82404321\|gb\|EAP45012.1\|...	362.0	[0..1]	[574..1]
gi\|120597685, gi... - gi\|82742583\|ref\|ZP_00905270.1\| Spermidine synthase [Shewanella sp. W3-18-1], gi\|82720045\|gb\|EAP54924... gi\|77811018, gi\|... - gi\|77814024\|ref\|ZP_00813293.1\| Spermine synthase [Shewanella putrefaciens CN-32], gi\|77811018\|gb\|EAO...	347.0	[0..1]	[574..1]
gi\|53761614, gi\|... - gi\|73542987\|ref\|YP_297507.1\| spermidine synthase [Ralstonia eutropha JMP134], gi\|72120400\|gb\|AAZ6266...	345.0	[0..20]	[565..2]
SPEE_OCEIH - Probable spermidine synthase OS=Oceanobacillus iheyensis GN=speE PE=3 SV=1 SPEE_OCEIH - Polyamine aminopropyltransferase OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 39...	340.0	[0..24]	[565..13]
gi\|126636854, gi... - gi\|78365925\|ref\|ZP_00836209.1\| Spermidine synthase [Shewanella sp. PV-4], gi\|78362148\|gb\|EAP03968.1\|...	338.0	[0..4]	[573..6]

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Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHESQLTTSA AKPSRLGWFD DVLLLGIMAV LAGCGLIYEY LLSHYAGRIL GALEAAIYTM  60
   61 IGLMIVSMGL GAFAARKIKD AFTGFVVLEL TVALCGSLAI LITAAVIGFG QQLPMLIAST 120
  121 LGLPPDQLPE GGMIGTLQKL SEYLPYFWGV LLGLMIGMEI PLIARVRQSL SDEHLLHNAG 180
  181 TIYGADYIGA GIGAAIWVGF MLAIDIQLAA ALTASFNLLA GFVFIWRFWQ KI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.6
Match:	1pw4A
Description:	Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [233-574]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QRPKLLLAAH LVVTGVLLLL AIQGPSWEQQ FNNLLYKDKV VYAKATRFQQ LTFTERLRGN  60
   61 GLSPVYALYI NGRLQFSSSD EHIYHAFLVH PTLAASARHN KVLIIGGGDG LGLKQVLRWE 120
  121 PEQVTLLDLD AALVQLFKSP DPDMPERLSQ ALLSLNGNAF NDPRVTVIHD DAFNGVDKLI 180
  181 AKGDKYDAII VDLPDPSHPD LNKLYSDYFY RKLKELISND GALTVQSTSP YHAQKAFISV 240
  241 AKTLALAGFD VKQYHHNVPS FGEWGWSIAT LDGKDAQHRL AQLTKLPIAD DWLTLGLVKG 300
  301 AFEFPANFYQ DATNIKPNEL GSLQLYHYHQ QAWSETQGLD LF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.39794
Match:	1xj5A
Description:	X-RAY STRUCTURE OF SPERMIDINE SYNTHASE FROM ARABIDOPSIS THALIANA GENE AT1G23820
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
spermidine synthase activity	2.38563015463215	bayes_pls_golite062009
catalytic activity	1.62377578202456	bayes_pls_golite062009
transferase activity	1.27388514102581	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.14636302691827	bayes_pls_golite062009
methyltransferase activity	1.12602040164126	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.535429947810431	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: