YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350029, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	469 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350029, gi|....

Description	E-value	Query Range	Subject Range
gi\|15602617, gi\|... - gi\|15602617\|ref\|NP_245689.1\| pyridine nucleotide transhydrogenase [Pasteurella multocida subsp. mult...	704.0	[0..1]	[469..1]
gi\|37201013, gi\|... - gi\|37676471\|ref\|NP_936867.1\| pyridine nucleotide transhydrogenase [Vibrio vulnificus YJ016], gi\|3720...	700.0	[0..1]	[469..1]
gi\|82403495, gi\|... - gi\|82498500\|ref\|ZP_00883993.1\| NAD(P) transhydrogenase, beta subunit [Shewanella sp. MR-4], gi\|82403... gi\|117919305, gi... - gi\|78686307\|ref\|ZP_00851076.1\| NAD(P) transhydrogenase, beta subunit [Shewanella sp. ANA-3], gi\|7850... gi\|114046396, gi... - gi\|78689781\|ref\|ZP_00854438.1\| NAD(P) transhydrogenase, beta subunit [Shewanella sp. MR-7], gi\|78510...	698.0	[0..1]	[469..1]
gi\|188015255, gi... - gi\|188015255\|gb\|EDU53377.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|189355541, gi... - gi\|189355541\|gb\|EDU73960.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|168763698, gi... - gi\|189366180\|gb\|EDU84596.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|168771141, gi... - gi\|189360031\|gb\|EDU78450.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|187768709, gi... - gi\|187768709\|gb\|EDU32553.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|168783422, gi... - gi\|188999230\|gb\|EDU68216.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|168789436, gi... - gi\|189370972\|gb\|EDU89388.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC8... gi\|209912173, gi... - gi\|209918914\|ref\|YP_002292998.1\| pyridine nucleotide transhydrogenase [Escherichia coli SE11], gi\|20... gi\|217318050, gi... - gi\|217328703\|ref\|ZP_03444784.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str.... gi\|218360937, gi... - gi\|218554169\|ref\|YP_002387082.1\| pyridine nucleotide transhydrogenase [Escherichia coli IAI1], gi\|21... gi\|218558472, gi... - gi\|218558472\|ref\|YP_002391385.1\| pyridine nucleotide transhydrogenase [Escherichia coli S88], gi\|218... gi\|218351896, gi... - gi\|218695164\|ref\|YP_002402831.1\| pyridine nucleotide transhydrogenase [Escherichia coli 55989], gi\|2... gi\|218369818, gi... - gi\|218699832\|ref\|YP_002407461.1\| pyridine nucleotide transhydrogenase [Escherichia coli IAI39], gi\|2... gi\|218705102, gi... - gi\|218705102\|ref\|YP_002412621.1\| pyridine nucleotide transhydrogenase [Escherichia coli UMN026], gi\|... gi\|168800859, gi... - gi\|189376895\|gb\|EDU95311.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC5... gi\|169754973, gi... - gi\|170020045\|ref\|YP_001724999.1\| pyridine nucleotide transhydrogenase [Escherichia coli ATCC 8739], ... gi\|169889101, gi... - gi\|170081266\|ref\|YP_001730586.1\| pyridine nucleotide transhydrogenase, beta subunit [Escherichia col... gi\|195938992 - gi\|195938992\|ref\|ZP_03084374.1\| pyridine nucleotide transhydrogenase [Escherichia coli O157:H7 str. ... gi\|208725163, gi... - gi\|208810647\|ref\|ZP_03252523.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str.... gi\|208816653, gi... - gi\|208816653\|ref\|ZP_03257773.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str.... gi\|208819628, gi... - gi\|208819628\|ref\|ZP_03259948.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str.... gi\|209158336, gi... - gi\|209396936\|ref\|YP_002270674.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str... EG10745 - pyridine nucleotide transhydrogenase, beta subunit / Proton-translocating NAD(P) transhydrogenase, b... PNTB_SHIFL - NAD(P) transhydrogenase subunit beta OS=Shigella flexneri GN=pntB PE=3 SV=1 gi\|24112989, gi\|... - gi\|24112989\|ref\|NP_707499.1\| pyridine nucleotide transhydrogenase [Shigella flexneri 2a str. 301], g... PNTB_ECOL6 - NAD(P) transhydrogenase subunit beta OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) ... gi\|30041365, gi\|... - gi\|30063116\|ref\|NP_837287.1\| pyridine nucleotide transhydrogenase [Shigella flexneri 2a str. 2457T],... PNTB_ECOLI - NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) (Pyridine nucleotide transhydrogenase subunit beta... PNTB_ECO57 - NAD(P) transhydrogenase subunit beta OS=Escherichia coli O157:H7 GN=pntB PE=3 SV=1 PNTB_ECOL6 - NAD(P) transhydrogenase subunit beta OS=Escherichia coli O6 GN=pntB PE=3 SV=1 gi\|254592619, gi... - gi\|254793219\|ref\|YP_003078056.1\| pyridine nucleotide transhydrogenase, beta subunit [Escherichia col... gi\|253973564, gi... - gi\|254161663\|ref\|YP_003044771.1\| pyridine nucleotide transhydrogenase [Escherichia coli B str. REL60... gi\|13361775, gi\|... - gi\|15831562\|ref\|NP_310335.1\| pyridine nucleotide transhydrogenase [Escherichia coli O157:H7 str. Sak... gi\|253977759, gi... - gi\|254288452\|ref\|YP_003054200.1\| pyridine nucleotide transhydrogenase [Escherichia coli BL21(DE3)], ... gi\|110615123, gi... - gi\|110805575\|ref\|YP_689095.1\| pyridine nucleotide transhydrogenase [Shigella flexneri 5 str. 8401], ... gi\|251785060, gi... - gi\|251785060\|ref\|YP_002999364.1\| hypothetical protein B21_01561 [Escherichia coli BL21], gi\|24237733... gi\|238900818, gi... - gi\|238900818\|ref\|YP_002926614.1\| pyridine nucleotide transhydrogenase, beta subunit [Escherichia col... gi\|237705542, gi... - gi\|237705542\|ref\|ZP_04536023.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|227886040, gi... - gi\|227886040\|ref\|ZP_04003845.1\| pyridine nucleotide transhydrogenase [Escherichia coli 83972], gi\|22... gi\|1742636, gi\|8... - gi\|89108443\|ref\|AP_002223.1\| pyridine nucleotide transhydrogenase, beta subunit [Escherichia coli st... gi\|91210813, gi\|... - gi\|91210813\|ref\|YP_540799.1\| pyridine nucleotide transhydrogenase [Escherichia coli UTI89], gi\|91072... EG10745 - pyridine nucleotide transhydrogenase, beta subunit / Proton-translocating NAD(P) transhydrogenase, b... gi\|15802016, gi\|... - gi\|15802016\|ref\|NP_288037.1\| pyridine nucleotide transhydrogenase [Escherichia coli O157:H7 EDL933],... gi\|117623788, gi... - gi\|117623788\|ref\|YP_852701.1\| pyridine nucleotide transhydrogenase [Escherichia coli APEC O1], gi\|11... gi\|124529243, gi... - gi\|124529243\|ref\|ZP_01700318.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli B], gi\|12450... gi\|82776829, gi\|... - gi\|82776829\|ref\|YP_403178.1\| pyridine nucleotide transhydrogenase [Shigella dysenteriae Sd197], gi\|8... gi\|75512965, gi\|... - gi\|75512965\|ref\|ZP_00735446.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli 536... gi\|74312073, gi\|... - gi\|74312073\|ref\|YP_310492.1\| pyridine nucleotide transhydrogenase [Shigella sonnei Ss046], gi\|738555... gi\|194436470, gi... - gi\|83587937\|ref\|ZP_00926563.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli 101... gi\|187731810, gi... - gi\|75178503\|ref\|ZP_00698549.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Shigella boydii BS51... gi\|194419839, gi... - gi\|83570992\|ref\|ZP_00922434.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Shigella dysenteriae... gi\|75212939, gi\|... - gi\|75212939\|ref\|ZP_00712937.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli B17... gi\|192927426, gi... - gi\|75257021\|ref\|ZP_00728581.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli E22... gi\|157155678, gi... - gi\|75190642\|ref\|ZP_00703909.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli E24... gi\|75195682, gi\|... - gi\|75195682\|ref\|ZP_00705752.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli HS]...	697.0	[0..1]	[469..1]
gi\|218689548, gi... - gi\|218689548\|ref\|YP_002397760.1\| pyridine nucleotide transhydrogenase [Escherichia coli ED1a], gi\|21... gi\|110641724, gi... - gi\|110641724\|ref\|YP_669454.1\| pyridine nucleotide transhydrogenase [Escherichia coli 536], gi\|110343... gi\|191174334, gi... - gi\|75236687\|ref\|ZP_00720766.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli F11... gi\|215264850, gi... - gi\|215486778\|ref\|YP_002329209.1\| pyridine nucleotide transhydrogenase [Escherichia coli O127:H6 str....	697.0	[0..1]	[469..1]
gi\|52425278, gi\|... - gi\|52425278\|ref\|YP_088415.1\| pyridine nucleotide transhydrogenase [Mannheimia succiniciproducens MBE...	697.0	[0..1]	[469..1]
gi\|145565844, gi... - gi\|146294154\|ref\|YP_001184578.1\| pyridine nucleotide transhydrogenase [Shewanella putrefaciens CN-32... gi\|82720688, gi\|... - gi\|82741967\|ref\|ZP_00904675.1\| NAD(P) transhydrogenase, beta subunit [Shewanella sp. W3-18-1], gi\|82... gi\|124509733, gi... - gi\|124546863\|ref\|ZP_01705884.1\| NAD(P) transhydrogenase, beta subunit [Shewanella putrefaciens 200],...	696.0	[0..1]	[469..1]
gi\|82544031, gi\|... - gi\|82544031\|ref\|YP_407978.1\| pyridine nucleotide transhydrogenase [Shigella boydii Sb227], gi\|812454...	695.0	[0..1]	[469..1]
gi\|192956443, gi... - gi\|75234915\|ref\|ZP_00719194.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli E11...	695.0	[0..1]	[469..1]
gi\|190904067, gi... - gi\|75230949\|ref\|ZP_00717398.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli B7A...	695.0	[0..1]	[469..1]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQGLVTAAY IIAAVLFIFS LAGLSKQETA KHGNLFGITG MAIALLATIF NPDTSGVAWI  60
   61 IVAMVIGGAI GVRLALKVEM T

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [82-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EMPELVAVLH SFVGMAAVLV GFNSFIDLHP EQVSQVGVGA HMTGAMLNIH LVEVFLGIFI  60
   61 GAVTFTGSIV AFGKLRGLIS SKPLMLPHRH KLNLIAVLVS LGLLVYFVQT GGTMPALLLM 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [202-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLIAFAFGWH LVASIGGADM PVVVSMLNSY SGWAAAAAGF MLSNDLLIVT GALVGSSGAI  60
   61 LSYIMCKAMN RSFISVIAGG F

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [283-469]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTDGVASSSD QEMGEYRETN AEDVADMLKN ATSVIITPGY GMAVAQAQYP VAEITQKLRD  60
   61 RGVKVRFGIH PVAGRLPGHM NVLLAEAKVP YDIVLEMDEI NEDFSDTDVV LVIGANDTVN 120
  121 PAAMEDPGSP IAGMPVLEVW KAQNVIGFKR SMNTGYAGVQ NPLFFKDNTQ MLFGDAKASV 180
  181 EAILKAL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	90.69897
Match:	2bruC
Description:	No description for 2bruC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits