YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350028, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	508 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350028, gi|....

Description	E-value	Query Range	Subject Range
gi\|75190643 - gi\|75190643\|ref\|ZP_00703910.1\| COG3288: NAD/NADP transhydrogenase alpha subunit [Escherichia coli E2...	651.0	[0..1]	[508..6]
gi\|13361776, gi\|... - gi\|15831563\|ref\|NP_310336.1\| NAD(P) transhydrogenase subunit alpha [Escherichia coli O157:H7], gi\|13... gi\|209769922, gi... - pir\|\|B85766 hypothetical protein pntA [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15802017, gi\|... - gi\|15802017\|ref\|NP_288038.1\| NAD(P) transhydrogenase subunit alpha [Escherichia coli O157:H7 EDL933]... gi\|189355563, gi... - gi\|189402450\|ref\|ZP_03006720.1\| NAD(P) transhydrogenase, alpha subunit [Escherichia coli O157:H7 str... gi\|13361776, gi\|... - gi\|15831563\|ref\|NP_310336.1\| NAD(P) transhydrogenase subunit alpha [Escherichia coli O157:H7 str. Sa... gi\|254592620, gi... - gi\|254793220\|ref\|YP_003078057.1\| pyridine nucleotide transhydrogenase, alpha subunit [Escherichia co... gi\|168763697, gi... - gi\|189366205\|gb\|EDU84621.1\| NAD(P) transhydrogenase, alpha subunit [Escherichia coli O157:H7 str. EC...	647.0	[0..1]	[508..1]
gi\|187730548, gi... - gi\|187730548\|ref\|YP_001880357.1\| NAD(P) transhydrogenase, alpha subunit [Shigella boydii CDC 3083-94... gi\|82544030, gi\|... - gi\|82544030\|ref\|YP_407977.1\| NAD(P) transhydrogenase subunit alpha [Shigella boydii Sb227], gi\|81245...	645.0	[0..1]	[508..1]
gi\|75178502 - gi\|75178502\|ref\|ZP_00698548.1\| COG3288: NAD/NADP transhydrogenase alpha subunit [Shigella boydii BS5...	645.0	[0..1]	[508..6]
gi\|74312072, gi\|... - gi\|74312072\|ref\|YP_310491.1\| NAD(P) transhydrogenase subunit alpha [Shigella sonnei Ss046], gi\|73855... gi\|218351897, gi... - gi\|218695165\|ref\|YP_002402832.1\| NAD(P) transhydrogenase subunit alpha [Escherichia coli 55989], gi\|... gi\|218554170, gi... - gi\|218554170\|ref\|YP_002387083.1\| NAD(P) transhydrogenase subunit alpha [Escherichia coli IAI1], gi\|2... gi\|209912174, gi... - gi\|209918915\|ref\|YP_002292999.1\| NAD(P) transhydrogenase subunit alpha [Escherichia coli SE11], gi\|2...	645.0	[0..1]	[508..1]
gi\|26247850, gi\|... - gi\|26247850\|ref\|NP_753890.1\| NAD(P) transhydrogenase subunit alpha [Escherichia coli CFT073], gi\|261...	645.0	[0..1]	[508..19]
gi\|75234916 - gi\|75234916\|ref\|ZP_00719195.1\| COG3288: NAD/NADP transhydrogenase alpha subunit [Escherichia coli E1... gi\|75230948 - gi\|75230948\|ref\|ZP_00717397.1\| COG3288: NAD/NADP transhydrogenase alpha subunit [Escherichia coli B7...	645.0	[0..1]	[508..6]
gi\|237705543, gi... - gi\|237705543\|ref\|ZP_04536024.1\| NAD(P) transhydrogenase subunit alpha [Escherichia sp. 3_2_53FAA], g... gi\|91210814, gi\|... - gi\|91210814\|ref\|YP_540800.1\| NAD(P) transhydrogenase subunit alpha [Escherichia coli UTI89], gi\|9107... gi\|115512913, gi... - gi\|117623789\|ref\|YP_852702.1\| NAD(P) transhydrogenase subunit alpha [Escherichia coli APEC O1], gi\|1...	644.0	[0..1]	[508..19]
gi\|83570993 - gi\|83570993\|ref\|ZP_00922435.1\| COG3288: NAD/NADP transhydrogenase alpha subunit [Shigella dysenteria...	644.0	[0..1]	[508..6]
gi\|75512964 - gi\|75512964\|ref\|ZP_00735445.1\| COG3288: NAD/NADP transhydrogenase alpha subunit [Escherichia coli 53... gi\|75195683 - gi\|75195683\|ref\|ZP_00705753.1\| COG3288: NAD/NADP transhydrogenase alpha subunit [Escherichia coli HS...	644.0	[0..1]	[508..6]

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Predicted Domain #1

Region A:
Residues: [1-415]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIGIPRESL VGETRVAATP ATVEQLKKLG FEVVVEANAG LLSSFDDAAF EAAGAKITTE  60
   61 VWQADLIFKV NAPTDAEIAL IKEGATLISF IWPAQNAELV EKLSKRNINV MAMDMVPRIS 120
  121 RAQSLDALSS MANIGGYRAV VEAAHHFGRF FTGQITAAGK VPPAKVLVIG AGVAGLAAIG 180
  181 TAGSLGAIVR AFDTRLEVAE QIESMGGQFL KLDFTNEDGS SSDGYAKTMS DEFIAAEMAL 240
  241 FAEQAKEVDI IITTALIPGR PAPKLITKAM VDSMKSGSVI VDMAAQAGGN CEYTQPGELF 300
  301 VTDNGVKVIG FTDLPGRLPA QSSQLYGTNL VNLMKLMCKE KDGTASINFD DVVMRNMTVV 360
  361 KEGQVTFPPP PISVSAAPVK PTVKIEAKAA QAKAPSKLKY ILAALGAAGF AAVAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	132.0
Match:	1x13A
Description:	Crystal structure of E. coli transhydrogenase domain I
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [416-508]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VAPAEFLSHF TVFILSCVVG YYVVWNVSHS LHTPLMSVTN AISGIIVVGA LLQIGQGSTL  60
   61 VTVLAFIAVL IASINIFGGF TVTQRMLKMF RKD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits