YRC Public Data Repository - Protein Structure Prediction

Protein:	CYSD_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	302 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYSD_SHEON.

Description	E-value	Query Range	Subject Range
gi\|86162580, gi\|... - gi\|87122033\|ref\|ZP_01077917.1\| sulfate adenylyltransferase, subunit 2 [Marinomonas sp. MED121], gi\|8...	309.0	[0..1]	[302..1]
CYSD_HAHCH - Sulfate adenylyltransferase subunit 2 OS=Hahella chejuensis (strain KCTC 2396) GN=cysD PE=3 SV=1	308.0	[0..1]	[302..1]
gi\|90437436, gi\|... - gi\|90581326\|ref\|ZP_01237122.1\| sulfate adenylyltransferase subunit 2 [Vibrio angustum S14], gi\|90437...	307.0	[0..1]	[302..1]
CYSD_SACD2 - Sulfate adenylyltransferase subunit 2 OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17...	307.0	[0..1]	[302..2]
gi\|89047632, gi\|... - gi\|89076712\|ref\|ZP_01162999.1\| sulfate adenylyltransferase subunit 2 [Photobacterium sp. SKA34], gi\|...	307.0	[0..1]	[302..1]
CYSD_SHEAM - Sulfate adenylyltransferase subunit 2 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=cys...	306.0	[0..1]	[302..1]
gi\|190908433, gi... - gi\|75241857\|ref\|ZP_00725676.1\| COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS... CYSD_ECOL5 - Sulfate adenylyltransferase subunit 2 OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=cysD PE=...	306.0	[0..1]	[302..1]
CYSD_SHIFL - Sulfate adenylyltransferase subunit 2 OS=Shigella flexneri GN=cysD PE=3 SV=1 CYSD_SHIBS - Sulfate adenylyltransferase subunit 2 OS=Shigella boydii serotype 4 (strain Sb227) GN=cysD PE=3 SV=1 gi\|24053171, gi\|... - gi\|24114047\|ref\|NP_708557.1\| sulfate adenylyltransferase subunit 2 [Shigella flexneri 2a str. 301], ... gi\|30042365, gi\|... - gi\|30064109\|ref\|NP_838280.1\| sulfate adenylyltransferase subunit 2 [Shigella flexneri 2a str. 2457T]...	306.0	[0..1]	[302..1]
CYSD2_MARHV - Sulfate adenylyltransferase subunit 2 2 OS=Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / ...	306.0	[0..1]	[302..3]
gi\|192927333, gi... - gi\|75256958\|ref\|ZP_00728534.1\| COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS... gi\|194427900, gi... - gi\|75210959\|ref\|ZP_00711083.1\| COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS... CYSD_ECO24 - Sulfate adenylyltransferase subunit 2 OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=cysD P... gi\|170765520, gi... - gi\|170765520\|ref\|ZP_02900331.1\| sulfate adenylyltransferase, subunit 2 [Escherichia albertii TW07627... CYSD_ECOSE - Sulfate adenylyltransferase subunit 2 OS=Escherichia coli (strain SE11) GN=cysD PE=3 SV=1 sp\|B7UHH1\|CYSD_ECO27 - Sulfate adenylyltransferase subunit 2 OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=cysD P... CYSD_ECO81 - Sulfate adenylyltransferase subunit 2 OS=Escherichia coli O81 (strain ED1a) GN=cysD PE=3 SV=1 CYSD_ECOLU - Sulfate adenylyltransferase subunit 2 OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=cys... CYSD_ECO27 - Sulfate adenylyltransferase subunit 2 OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=cysD P... CYSD_ESCF3 - Sulfate adenylyltransferase subunit 2 OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC... CYSD_SHIF8 - Sulfate adenylyltransferase subunit 2 OS=Shigella flexneri serotype 5b (strain 8401) GN=cysD PE=3 SV...	306.0	[0..1]	[302..1]

Back

Predicted Domain #1

Region A:
Residues: [1-302]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGRELSHLQ QLEAESIQII REVAAEFDNP VMLYSIGKDS SVMLHLARKA FYPGKIPFPL  60
   61 LHVDTGWKFK EMIAFRDAQA KKFGFELLTH TNPEGVAQGI NPFDHGSAKH TDIMKTQGLK 120
  121 QALNQYGFDA AFGGARRDEE KSRAKERVYS FRDRHHRWDP KNQRPELWRT YNGAVNKGES 180
  181 IRVFPLSNWT ELDIWQYIYQ ENIELVPLYF AAERPVVERA GQLIMADDER MKLEEGEAIK 240
  241 YEVVRFRTLG CYPLTAAMHS QADNLEKIIE EMLLTRSSER QGRLIDSDQS ASMEQKKRQG 300
  301 YF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.0
Match:	1zunA
Description:	Crystal Structure of a GTP-Regulated ATP Sulfurylase Heterodimer from Pseudomonas syringae
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ligase activity	1.34640449962741	bayes_pls_golite062009
catalytic activity	1.19930793139888	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	0.196167461233561	bayes_pls_golite062009
sulfate adenylyltransferase activity	0.157667990585829	bayes_pls_golite062009
asparagine synthase (glutamine-hydrolyzing) activity	0.0567787332370804	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: