YRC Public Data Repository - Protein Structure Prediction

Protein:	CYSC_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	205 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYSC_SHEON.

Description	E-value	Query Range	Subject Range
CYSC_MARHV - Adenylyl-sulfate kinase OS=Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / DSM 11845 / VT8)...	212.0	[0..1]	[199..1]
gi\|110284175, gi... - gi\|69280172\|ref\|ZP_00614844.1\| Adenylylsulfate kinase [Mesorhizobium sp. BNC1], gi\|68189596\|gb\|EAN04...	211.0	[0..3]	[195..447]
gi\|56962388, gi\|... - gi\|56962388\|ref\|YP_174114.1\| adenylylsulfate kinase [Bacillus clausii KSM-K16], gi\|56908626\|dbj\|BAD6...	209.0	[0..2]	[196..6]
gi\|109897971, gi... - gi\|76791492\|ref\|ZP_00773998.1\| Adenylylsulfate kinase [Pseudoalteromonas atlantica T6c], gi\|76593174...	205.0	[0..2]	[196..3]
gi\|114227886, gi... - gi\|78701063\|ref\|ZP_00865516.1\| Adenylylsulfate kinase:Sulfate adenylyltransferase, large subunit [Al...	204.0	[0..3]	[197..444]
gi\|45518946, gi\|... - gi\|73541220\|ref\|YP_295740.1\| bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kina...	204.0	[0..3]	[200..448]
gi\|83576539, gi\|... - gi\|83593625\|ref\|YP_427377.1\| bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kina... gi\|48763196 - ref\|ZP_00267752.1\| COG2895: GTPases - Sulfate adenylate transferase subunit 1 [Rhodospirillum rubrum...	204.0	[0..2]	[203..438]
gi\|81299748, gi\|... - gi\|81299748\|ref\|YP_399956.1\| adenylylsulfate kinase [Synechococcus elongatus PCC 7942], gi\|81168629\|... gi\|56750612, gi\|... - gi\|56750612\|ref\|YP_171313.1\| adenylylsulfate kinase [Synechococcus elongatus PCC 6301], gi\|56685571\|...	203.0	[0..3]	[202..9]
gi\|106760900, gi... - gi\|119944563\|ref\|YP_942243.1\| adenylyl-sulfate kinase [Psychromonas ingrahamii 37], gi\|119863167\|gb\|...	202.0	[0..2]	[196..16]
gi\|56378791, gi\|... - gi\|56418949\|ref\|YP_146267.1\| adenylylsulfate kinase [Geobacillus kaustophilus HTA426], gi\|56378791\|d...	202.0	[0..2]	[198..3]

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Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNIVWHQHS VDQAARARLK GQNPVLLWFT GLSGAGKSTL AGALERALFE AGFHTYLLDG  60
   61 DNVRHGLCKD LGFSVADRDE NLRRVGEVAK LMVDAGLVVL SAFISPTREE RDSIRARFPE 120
  121 GQFIEVHVST PLSVCELRDP KGLYVKARKG EIAHFTGISS PYEAPLSAEL TIDTSKGDLA 180
  181 SQVHALIDYL TAIDVISSNR LASLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.522879
Match:	1x6vB
Description:	The crystal structure of human 3'-phosphoadenosine-5'-phosphosulfate synthetase 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.0914769303586	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
nucleic acid binding	0.727912309521959	bayes_pls_golite062009
DNA binding	0.263924823205515	bayes_pls_golite062009
nucleotide binding	0.0593371872166591	bayes_pls_golite062009
purine nucleotide binding	0.0285347443435678	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: