YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350003, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	250 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350003, gi|....

Description	E-value	Query Range	Subject Range
gi\|146294124, gi... - gi\|77813971\|ref\|ZP_00813240.1\| DSBA oxidoreductase [Shewanella putrefaciens CN-32], gi\|77810965\|gb\|E... gi\|124546833, gi... - gi\|124546833\|ref\|ZP_01705854.1\| DSBA oxidoreductase [Shewanella putrefaciens 200], gi\|124509703\|gb\|E...	186.0	[0..1]	[249..1]
gi\|78689800, gi\|... - gi\|78689800\|ref\|ZP_00854457.1\| thiol:disulfide interchange protein, DsbA family [Shewanella sp. MR-7...	185.0	[0..1]	[250..1]
gi\|113971398, gi... - gi\|82498244\|ref\|ZP_00883752.1\| thiol:disulfide interchange protein, DsbA family [Shewanella sp. MR-4...	185.0	[0..1]	[250..1]
gi\|82742544, gi\|... - gi\|82742544\|ref\|ZP_00905233.1\| thiol:disulfide interchange protein, DsbA family [Shewanella sp. W3-1...	181.0	[0..1]	[249..1]
gi\|117611658, gi... - gi\|78686328\|ref\|ZP_00851097.1\| thiol:disulfide interchange protein, DsbA family [Shewanella sp. ANA-...	170.0	[0..1]	[250..1]
gi\|68520587, gi\|... - gi\|68541705\|ref\|ZP_00581446.1\| DSBA oxidoreductase [Shewanella baltica OS155], gi\|68520587\|gb\|EAN440...	167.0	[0..1]	[250..1]
gi\|160859617, gi... - gi\|160874095\|ref\|YP_001553411.1\| DSBA oxidoreductase [Shewanella baltica OS195], gi\|160859617\|gb\|ABX...	167.0	[0..1]	[250..1]
gi\|82737393, gi\|... - gi\|82737393\|ref\|ZP_00900243.1\| thiol:disulfide interchange protein, DsbA family [Pseudomonas putida ... tr\|I7CBH6\|I7CBH6... - Thiol:disulfide interchange protein OS=Pseudomonas putida (strain DOT-T1E) GN=dsbA PE=3 SV=1	157.0	[0..2]	[222..1]
gi\|24981474, gi\|... - gi\|26986872\|ref\|NP_742297.1\| DsbA family thiol:disulfide interchange protein [Pseudomonas putida KT2...	156.0	[0..2]	[222..1]
gi\|168775590, gi... - gi\|187768889\|gb\|EDU32733.1\| thiol:disulfide interchange protein DsbA [Escherichia coli O157:H7 str. ... gi\|168768140, gi... - gi\|189362598\|gb\|EDU81017.1\| thiol:disulfide interchange protein DsbA [Escherichia coli O157:H7 str. ... gi\|189375314, gi... - gi\|189375314\|gb\|EDU93730.1\| thiol:disulfide interchange protein DsbA [Escherichia coli O157:H7 str. ... gi\|168780758, gi... - gi\|189001471\|gb\|EDU70457.1\| thiol:disulfide interchange protein DsbA [Escherichia coli O157:H7 str. ... gi\|169891168, gi... - gi\|170083333\|ref\|YP_001732653.1\| periplasmic protein disulfide isomerase I [Escherichia coli str. K-... gi\|170022125, gi... - gi\|170022125\|ref\|YP_001727079.1\| periplasmic protein disulfide isomerase I [Escherichia coli ATCC 87... gi\|208807131, gi... - gi\|208807131\|ref\|ZP_03249468.1\| thiol:disulfide interchange protein DsbA [Escherichia coli O157:H7 s... gi\|195940267 - gi\|195940267\|ref\|ZP_03085649.1\| periplasmic protein disulfide isomerase I [Escherichia coli O157:H7 ... EG11297 - periplasmic protein disulfide isomerase I / Thiol:disulfide interchange protein, periplasmic; alkali... gi\|124501226, gi... - gi\|124527524\|ref\|ZP_01698989.1\| DSBA oxidoreductase [Escherichia coli B], gi\|124501226\|gb\|EAY48691.1... gi\|168750329, gi... - gi\|188015424\|gb\|EDU53546.1\| thiol:disulfide interchange protein DsbA [Escherichia coli O157:H7 str. ... gi\|189364979, gi... - gi\|189364979\|gb\|EDU83395.1\| thiol:disulfide interchange protein DsbA [Escherichia coli O157:H7 str. ... gi\|168755523, gi... - gi\|189357226\|gb\|EDU75645.1\| thiol:disulfide interchange protein DsbA [Escherichia coli O157:H7 str. ... DSBA_ECO57 - Thiol:disulfide interchange protein DsbA OS=Escherichia coli O157:H7 GN=dsbA PE=3 SV=1 gi\|188491865, gi... - gi\|75513990\|ref\|ZP_00736343.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Escherichia coli... EG11297 - periplasmic protein disulfide isomerase I / Thiol:disulfide interchange protein, periplasmic; alkali... gi\|73857843, gi\|... - gi\|74314366\|ref\|YP_312785.1\| periplasmic protein disulfide isomerase I [Shigella sonnei Ss046], gi\|7... gi\|218707486, gi... - gi\|218707486\|ref\|YP_002415005.1\| periplasmic protein disulfide isomerase I [Escherichia coli UMN026]... gi\|15804445, gi\|... - gi\|15804445\|ref\|NP_290485.1\| periplasmic protein disulfide isomerase I [Escherichia coli O157:H7 EDL... gi\|75238303, gi\|... - gi\|75238303\|ref\|ZP_00722302.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Escherichia coli... gi\|192925589, gi... - gi\|75255031\|ref\|ZP_00726943.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Escherichia coli... DSBA_ECOLI - Thiol:disulfide interchange protein dsbA precursor - Escherichia coli gi\|81247616, gi\|... - gi\|82546205\|ref\|YP_410152.1\| periplasmic protein disulfide isomerase I [Shigella boydii Sb227], gi\|8... gi\|89110167, gi\|... - gi\|89110167\|ref\|AP_003947.1\| periplasmic protein disulfide isomerase I [Escherichia coli str. K-12 s... gi\|194420904, gi... - gi\|83584515\|ref\|ZP_00923192.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Escherichia coli... gi\|208821648, gi... - gi\|208821648\|ref\|ZP_03261968.1\| thiol:disulfide interchange protein DsbA [Escherichia coli O157:H7 s... gi\|187428800, gi... - gi\|75176754\|ref\|ZP_00696882.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Shigella boydii ... gi\|208735795, gi... - gi\|208814518\|ref\|ZP_03255847.1\| thiol:disulfide interchange protein DsbA [Escherichia coli O157:H7 s... gi\|13364259, gi\|... - gi\|15834037\|ref\|NP_312810.1\| periplasmic protein disulfide isomerase I [Escherichia coli O157:H7 str... gi\|209914591, gi... - gi\|209921332\|ref\|YP_002295416.1\| periplasmic protein disulfide isomerase I [Escherichia coli SE11], ... gi\|110617003, gi... - gi\|110807455\|ref\|YP_690975.1\| periplasmic protein disulfide isomerase I [Shigella flexneri 5 str. 84... gi\|209400816, gi... - gi\|209400816\|ref\|YP_002273372.1\| thiol:disulfide interchange protein DsbA [Escherichia coli O157:H7 ... gi\|194411509, gi... - gi\|75208258\|ref\|ZP_00708618.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Escherichia coli... gi\|218363188, gi... - gi\|218556419\|ref\|YP_002389333.1\| periplasmic protein disulfide isomerase I [Escherichia coli IAI1], ... gi\|190900508, gi... - gi\|75227234\|ref\|ZP_00714032.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Escherichia coli... gi\|217321352, gi... - gi\|217325131\|ref\|ZP_03441215.1\| thiol:disulfide interchange protein DsbA [Escherichia coli O157:H7 s... gi\|157155214, gi... - gi\|75188595\|ref\|ZP_00701862.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Escherichia coli... gi\|218701440, gi... - gi\|218701440\|ref\|YP_002409069.1\| periplasmic protein disulfide isomerase I [Escherichia coli IAI39],... gi\|157163329, gi... - gi\|75197736\|ref\|ZP_00707806.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Escherichia coli... gi\|218697574, gi... - gi\|218697574\|ref\|YP_002405241.1\| periplasmic protein disulfide isomerase I [Escherichia coli 55989],... gi\|238902928, gi... - gi\|238902928\|ref\|YP_002928724.1\| periplasmic protein disulfide isomerase I [Escherichia coli BW2952]... gi\|251787125, gi... - gi\|251787125\|ref\|YP_003001429.1\| hypothetical protein B21_03695 [Escherichia coli BL21], gi\|24237939... gi\|254163812, gi... - gi\|254163812\|ref\|YP_003046920.1\| periplasmic protein disulfide isomerase I [Escherichia coli B str. ... gi\|254290562, gi... - gi\|254290562\|ref\|YP_003056310.1\| periplasmic protein disulfide isomerase I [Escherichia coli BL21(DE... gi\|254595251, gi... - gi\|254795851\|ref\|YP_003080688.1\| periplasmic protein disulfide isomerase I [Escherichia coli O157:H7...	155.0	[0..2]	[218..1]

Back

Predicted Domain #1

Region A:
Residues: [1-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKPIALAVA LIVAPFSTFA ANFVEGTHYT QISDKALSSE PKLTEFFSFY CHNCFNMETN  60
   61 YLPDIKANLN KSIAFDSKHV DFMNSALGTE VMRSLAVIQD LDNKDALTHA MFAAIQGEEG 120
  121 ANGHDHSAPG HKHESQINSR DDIKQVFAKF GIDAAKYDKL ADSKSTEEKL ALWRAQQNQF 180
  181 RIESVPAFIV NDKYAVNLSS IRTLDELISL INYLAVEKDP QPAKSSGGSL NWLFLAFAAV 240
  241 FALSRQTRLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.045757
Match:	1bedA
Description:	STRUCTURE OF DISULFIDE OXIDOREDUCTASE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein disulfide isomerase activity	1.48801287843472	bayes_pls_golite062009
intramolecular oxidoreductase activity, transposing S-S bonds	1.48801287843472	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting keto- and enol-groups	1.37876060576659	bayes_pls_golite062009
catalytic activity	1.04263226837398	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	0.25957505753521	bayes_pls_golite062009
isomerase activity	0.24662332270942	bayes_pls_golite062009
disulfide oxidoreductase activity	0.22354310938224	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: