YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375212, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375212, gi|....

Description	E-value	Query Range	Subject Range
gi\|117919328, gi... - gi\|78686330\|ref\|ZP_00851099.1\| dihydropteridine reductase/oxygen-insensitive NAD(P)H nitroreductase ...	196.0	[0..1]	[217..1]
gi\|120597741, gi... - gi\|82742542\|ref\|ZP_00905231.1\| dihydropteridine reductase/oxygen-insensitive NAD(P)H nitroreductase ... gi\|124546831, gi... - gi\|124546831\|ref\|ZP_01705852.1\| nitroreductase [Shewanella putrefaciens 200], gi\|124509701\|gb\|EAY537...	193.0	[0..1]	[217..1]
gi\|113886080, gi... - gi\|82498242\|ref\|ZP_00883750.1\| dihydropteridine reductase/oxygen-insensitive NAD(P)H nitroreductase ...	193.0	[0..1]	[217..1]
gi\|160859619, gi... - gi\|160874097\|ref\|YP_001553413.1\| dihydropteridine reductase [Shewanella baltica OS195], gi\|160859619... gi\|152999479, gi... - gi\|152999479\|ref\|YP_001365160.1\| dihydropteridine reductase [Shewanella baltica OS185], gi\|151364097...	192.0	[0..1]	[217..1]
gi\|77810963, gi\|... - gi\|77813969\|ref\|ZP_00813238.1\| Dihydropteridine reductase [Shewanella putrefaciens CN-32], gi\|778109...	191.0	[0..1]	[217..1]
gi\|126175593, gi... - gi\|68541707\|ref\|ZP_00581448.1\| Dihydropteridine reductase [Shewanella baltica OS155], gi\|68520589\|gb... gi\|149114546, gi... - gi\|217972156\|ref\|YP_002356907.1\| dihydropteridine reductase [Shewanella baltica OS223], gi\|217497291...	191.0	[0..1]	[217..1]
gi\|78689802, gi\|... - gi\|78689802\|ref\|ZP_00854459.1\| dihydropteridine reductase/oxygen-insensitive NAD(P)H nitroreductase ...	188.0	[0..1]	[217..1]
gi\|104781425, gi... - gi\|95110412\|emb\|CAK15120.1\| oxygen-insensitive NADPH nitroreductase [Pseudomonas entomophila L48], g... gi\|95110412 - gi\|95110412\|emb\|CAK15120.1\| oxygen-insensitive NADPH nitroreductase [Pseudomonas entomophila L48]	188.0	[0..2]	[217..1]
gi\|78355133, gi\|... - gi\|78355133\|ref\|YP_386582.1\| dihydropteridine reductase [Desulfovibrio desulfuricans subsp. desulfur...	187.0	[0..1]	[217..1]
gi\|229133906, gi... - gi\|229133906\|ref\|ZP_04262729.1\| Nitroreductase [Bacillus cereus BDRD-ST196], gi\|228649607\|gb\|EEL0561... gi\|163940766, gi... - gi\|89207146\|ref\|ZP_01185693.1\| Nitroreductase [Bacillus weihenstephanensis KBAB4], gi\|89154931\|gb\|EA...	187.0	[0..2]	[216..8]

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Predicted Domain #1

Region A:
Residues: [1-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLSFLAKK RYTTKAFDPT KIIPTDKIAD IKTLLQFSPS STNSQPWHFV LAGTAEGKAL  60
   61 IAQATEHYAF NTQKILDASH VVVLCTRTQL DEAHLLQVLE QEAKDGRFAN EEAKQGQHNG 120
  121 RSFFANMHKF ELKDAQHWME KQVYLALGTL MLGASVLDID ACPIEGFDAT KLNQVLGLRE 180
  181 KGLCASVVVA LGYRSEEDFN AKLPKSRLAQ EVIFTEI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.69897
Match:	1necA
Description:	Oxygen-insensitive NAD(P)H nitroreductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.11149969304282	bayes_pls_golite062009
oxidoreductase activity	0.223640985940171	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: