YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375186, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	555 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375186, gi|....

Description	E-value	Query Range	Subject Range
gi\|51974390, gi\|... - gi\|52140921\|ref\|YP_085908.1\| phosphate regulon sensor protein [Bacillus cereus E33L], gi\|51974390\|gb...	234.0	[0..2]	[555..3]
gi\|30022663, gi\|... - gi\|30022663\|ref\|NP_834294.1\| phosphate regulon sensor protein phoR [Bacillus cereus ATCC 14579], gi\|...	233.0	[0..2]	[555..3]
gi\|89154470, gi\|... - gi\|89207576\|ref\|ZP_01186114.1\| PAS [Bacillus weihenstephanensis KBAB4], gi\|89154470\|gb\|EAR74501.1\| P...	233.0	[0..2]	[555..3]
gi\|47557784, gi\|... - gi\|47564998\|ref\|ZP_00236041.1\| sensory box histidine kinase PhoR [Bacillus cereus G9241], gi\|4755778...	233.0	[0..2]	[555..3]
gi\|20809032 - gi\|20809032\|ref\|NP_624203.1\| Sensory transduction histidine kinase [Thermoanaerobacter tengcongensis... gi\|20809032, gi\|... - gi\|20809032\|ref\|NP_624203.1\| sensory transduction histidine kinase [Thermoanaerobacter tengcongensis...	233.0	[0..2]	[554..13]
gi\|28203263, gi\|... - gi\|28210825\|ref\|NP_781769.1\| phosphate regulon sensor protein phoR [Clostridium tetani E88], gi\|2820...	233.0	[0..1]	[554..1]
gi\|49330250, gi\|... - gi\|49478694\|ref\|YP_038633.1\| phosphate regulon sensor protein [Bacillus thuringiensis serovar konkuk...	233.0	[0..2]	[555..3]
gi\|74490501, gi\|... - gi\|75762015\|ref\|ZP_00741929.1\| Phosphate regulon sensor protein phoR [Bacillus thuringiensis serovar... gi\|218899741, gi... - gi\|218899741\|ref\|YP_002448152.1\| sensory box histidine kinase PhoR [Bacillus cereus G9842], gi\|21854...	232.0	[0..2]	[555..3]
gi\|42783765, gi\|... - gi\|42783765\|ref\|NP_981012.1\| sensory box histidine kinase PhoR [Bacillus cereus ATCC 10987], gi\|4273...	232.0	[0..2]	[555..3]
gi\|30264658, gi\|... - gi\|30264658\|ref\|NP_847035.1\| sensory box histidine kinase PhoR [Bacillus anthracis str. Ames], gi\|30... gi\|65321955, gi\|... - gi\|65321955\|ref\|ZP_00394914.1\| COG0642: Signal transduction histidine kinase [Bacillus anthracis str... gi\|165869708, gi... - gi\|165869708\|ref\|ZP_02214366.1\| sensory box histidine kinase PhoR [Bacillus anthracis str. A0488], g... gi\|167530779, gi... - gi\|167633978\|ref\|ZP_02392301.1\| sensory box histidine kinase PhoR [Bacillus anthracis str. A0442], g... gi\|167513830, gi... - gi\|167638013\|ref\|ZP_02396291.1\| sensory box histidine kinase PhoR [Bacillus anthracis str. A0193], g... gi\|47530128, gi\|... - gi\|47530128\|ref\|YP_021477.1\| sensory box histidine kinase PhoR [Bacillus anthracis str. 'Ames Ancest... gi\|170685740, gi... - gi\|170685740\|ref\|ZP_02876963.1\| sensory box histidine kinase PhoR [Bacillus anthracis str. A0465], g... gi\|254757502 - gi\|254757502\|ref\|ZP_05209529.1\| sensory box histidine kinase PhoR [Bacillus anthracis str. Australia... gi\|254754670 - gi\|254754670\|ref\|ZP_05206705.1\| sensory box histidine kinase PhoR [Bacillus anthracis str. Vollum] gi\|254741732 - gi\|254741732\|ref\|ZP_05199419.1\| sensory box histidine kinase PhoR [Bacillus anthracis str. Kruger B] gi\|254736695 - gi\|254736695\|ref\|ZP_05194401.1\| sensory box histidine kinase PhoR [Bacillus anthracis str. Western N... gi\|254724958 - gi\|254724958\|ref\|ZP_05186741.1\| sensory box histidine kinase PhoR [Bacillus anthracis str. A1055] gi\|254687395 - gi\|254687395\|ref\|ZP_05151251.1\| sensory box histidine kinase PhoR [Bacillus anthracis str. CNEVA-906... gi\|229264805, gi... - gi\|229600397\|ref\|YP_002868867.1\| sensory box histidine kinase PhoR [Bacillus anthracis str. A0248], ... gi\|170705359, gi... - gi\|170705359\|ref\|ZP_02895823.1\| sensory box histidine kinase PhoR [Bacillus anthracis str. A0389], g... gi\|227004296, gi... - gi\|227817372\|ref\|YP_002817381.1\| sensory box histidine kinase PhoR [Bacillus anthracis str. CDC 684]... gi\|177651147, gi... - gi\|177651147\|ref\|ZP_02933978.1\| sensory box histidine kinase PhoR [Bacillus anthracis str. A0174], g... gi\|190559871, gi... - gi\|190569089\|ref\|ZP_03021989.1\| sensory box histidine kinase PhoR [Bacillus anthracis Tsiankovskii-I... gi\|196032783, gi... - gi\|196032783\|ref\|ZP_03100196.1\| sensory box histidine kinase PhoR [Bacillus cereus W], gi\|195994212\|... gi\|218905815, gi... - gi\|218905815\|ref\|YP_002453649.1\| sensory box histidine kinase PhoR [Bacillus cereus AH820], gi\|21854...	232.0	[0..2]	[555..3]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLRTKLVIY STVCCAFGVL LTLATMKYLF STSSPEVATP ATLPDVQLPE LDLAQLQDSV  60
   61 AAIESAIKNT EQFQQAFSLQ ERLRADQIKH ELQKLEQLKQ EQLQIKLYKL ELLKQGLFNP 120
  121 APHPANMVPA L

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.764	a.118.11	Cytochrome c oxidase subunit E
View	Download	0.572	a.101.1	Uteroglobin-like
View	Download	0.486	a.2.3	Chaperone J-domain
View	Download	0.469	a.2.3	Chaperone J-domain
View	Download	0.464	a.4.12	TrpR-like

Predicted Domain #2

Region A:
Residues: [132-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVVEQSKLPP LSLDPQAEHT PPIFELVLVI LLACSVCALG VAWFTRHLAR SLDALEVGLL  60
   61 NFNDNDFSVS IPTNGEGQLK TLAELFNHSA AKLRQERQYI YQRELLLDKV IQSSPNVMLL 120
  121 LNDHQRLMY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.64
Match:	2f95B
Description:	M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [261-555]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ANDAARHLFQ IKGKMEGLSL EELLQELPEA LALALKQEKS GLFTMGEDDA ETWYLSRGQF  60
   61 LLNNQQHNLI LLKQMTRELN RQEVAVWKKV IRIISHELNN SVAPIASMVN SGRLLTKDLD 120
  121 NPKLKLIFDT IESRTNHLSQ FIYNYARFAK LPLPQRRKVA WSQLIEQLTQ HYPFSLTHEL 180
  181 PIEDGYVDQG QMEQVLLNLL KNAHESGSNP EEVTLSIRYQ KMVDGGGFSI KIEDRGSGMS 240
  241 EEVLEQALLP FYSTKQSGTG LGLPLCREII EAHDGSISMH NRTEGGLSVL LWLPQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.30103
Match:	2c2aA
Description:	Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits