YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375167, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	697 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375167, gi|....

Description	E-value	Query Range	Subject Range
gi\|77813663, gi\|... - gi\|77813663\|ref\|ZP_00812937.1\| TonB-dependent haemoglobin/transferrin/lactoferrin receptor:TonB-depe...	384.0	[0..1]	[697..1]
gi\|124510768, gi... - gi\|124545792\|ref\|ZP_01704967.1\| TonB-dependent heme/hemoglobin receptor family protein [Shewanella p... gi\|120599996, gi... - gi\|82743338\|ref\|ZP_00905990.1\| TonB-dependent haemoglobin/transferrin/lactoferrin receptor:TonB-depe...	383.0	[0..1]	[697..1]
gi\|113908587, gi... - gi\|160874174\|ref\|YP_001553490.1\| TonB-dependent heme/hemoglobin receptor family protein [Shewanella ...	378.0	[0..1]	[697..1]
gi\|125996401, gi... - gi\|68541772\|ref\|ZP_00581512.1\| TonB-dependent haemoglobin/transferrin/lactoferrin receptor:TonB-depe...	375.0	[0..1]	[697..1]
gi\|78507678, gi\|... - gi\|78684741\|ref\|ZP_00849524.1\| TonB-dependent haemoglobin/transferrin/lactoferrin receptor:TonB-depe...	374.0	[0..1]	[697..1]
gi\|91792152, gi\|... - gi\|91792152\|ref\|YP_561803.1\| TonB-dependent haem/haemoglobin receptor [Shewanella denitrificans OS21...	352.0	[0..1]	[697..1]
gi\|13774062 - gi\|13774062\|gb\|AAG23395.1\| HugA [Plesiomonas shigelloides]	335.0	[0..3]	[697..27]
gi\|71550811, gi\|... - gi\|71550811\|ref\|ZP_00670892.1\| TonB-dependent haemoglobin/transferrin/lactoferrin receptor:TonB-depe...	316.0	[0..1]	[697..1]
gi\|30138873, gi\|... - gi\|30249510\|ref\|NP_841580.1\| TonB-dependent receptor protein [Nitrosomonas europaea ATCC 19718], gi\|...	310.0	[0..2]	[697..4]
gi\|77164377, gi\|... - gi\|77164377\|ref\|YP_342902.1\| TonB-dependent haemoglobin/transferrin/lactoferrin receptor [Nitrosococ...	310.0	[0..1]	[697..1]

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Predicted Domain #1

Region A:
Residues: [1-697]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKKPLVIAV AMALSSTALS FALAAEEGVK PTAVQKSAEQ GVVETEFDEV LVSATRLSEK  60
   61 VSETSRSVAV VAEEQLNVSQ ASSVAEVLKN EANINLTNGP RATSQGVEIR GLSGDRVLQT 120
  121 IDGARQNTSS GHRGSYFMDP ELLKSIEVIR GPASSLWGSG ALGGVVAQNT KSAQDFLAPN 180
  181 ETFGGYLKQG YDTNGDRTKT SGAVYGQQAT VDWLLNGSYF DSNNINTGND ETLVNSASSG 240
  241 SSGLAKFGWQ ADEASRLALS ARVNKINELV PSNPSAAVSS SVPLVRRKTD DQNITLNYSL 300
  301 APANNPYLDT HLQVYWNSTD YDEDRVTKGQ LDSTEYRTVG INLNNSSQLG NTKLTYGVDG 360
  361 YRDTLKTVRD DKGQVGQRPE DIDGETTVWG AFTRADVQLT QTVNLDAALR YDSFKNQSHN 420
  421 LNASADDTEL SPSLGLSWQT QPWLTLSARY DQAFRAPTVE EMFSSGTHYC IPPIPGFLPK 480
  481 GLCNTFATNP NLKSEVARNK ELKADFRFNE LAGDDELAIT LNIFRNDVDD FIVQQVSNPY 540
  541 RGIPGLEQTT SWNNVEDAQL TGFELSGRYR IGQTRLAMNY GQTRGEDRNT GDYIEGMPAN 600
  601 KFNVDLSQGI MEGDMKLGTR VTYVASQTNT PTGYSVAKYD EYTLWDVYLA WEPAMGVMSG 660
  661 LRVDFAIENI GDEKYQQAWQ TLYQPGRNMK LSARYMF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.69897
Match:	2hdfA
Description:	No description for 2hdfA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits