YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375158, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375158, gi|....

Description	E-value	Query Range	Subject Range
gi\|99992, gi\|166418 - pir\|\|A41440 protein disulfide-isomerase (EC 5.3.4.1) precursor - alfalfa (clone B2), gi\|166418\|gb\|A...	128.0	[0..38]	[180..5]
gi\|14494995, gi\|... - gi\|14530190\|emb\|CAC42245.1\| protein disulfide isomerase [Toxoplasma gondii], gi\|14494995\|emb\|CAC2836... gi\|221504240 - gi\|221504240\|gb\|EEE29915.1\| protein disulfide isomerase, putative [Toxoplasma gondii VEG] gi\|221483750 - gi\|221483750\|gb\|EEE22062.1\| protein disulfide isomerase, putative [Toxoplasma gondii GT1] gi\|211968957, gi... - gi\|237843991\|ref\|XP_002371293.1\| protein disulfide isomerase [Toxoplasma gondii ME49], gi\|211968957\|...	122.0	[0..36]	[180..1]
PDI_RICCO - Protein disulfide-isomerase OS=Ricinus communis PE=2 SV=1	122.0	[0..30]	[180..5]
gi\|55234248, gi\|... - gi\|57907032\|ref\|XP_551775.1\| ENSANGP00000026077 [Anopheles gambiae str. PEST], gi\|55234248\|gb\|EAL386...	121.0	[0..19]	[180..96]
PDI11_ARATH - Protein disulfide isomerase-like 1-1 OS=Arabidopsis thaliana GN=PDIL1-1 PE=1 SV=1	121.0	[0..37]	[180..1]
gi\|21703694 - gi\|21703694\|gb\|AAA49054.2\| cognin/prolyl-4-hydroxylase/protein disulfide isomerase [Gallus gallus]	120.0	[0..24]	[180..7]
PDI_WHEAT - Protein disulfide-isomerase OS=Triticum aestivum GN=PDI PE=2 SV=1	118.0	[0..68]	[180..41]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTITLISLI ILALLVGAIG LLMWQRSKGK PIPLAVIVVL GCFALGLGGI IGFVHKGEDY  60
   61 QAYQKLQWHT LAPEKIAPLV AQGYTVFVDI TSDWCSICQT NKAEVTHREQ VVNALMADDI 120
  121 ILMQGNWSEA DNTIAGYMQY EGIPGTPYNK IYGPRNPNGI VLPSKLTIEA VINGLAQAKA 180
  181 L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.221849
Match:	1mekA
Description:	HUMAN PROTEIN DISULFIDE ISOMERASE, NMR, 40 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein disulfide isomerase activity	1.48801287843472	bayes_pls_golite062009
intramolecular oxidoreductase activity, transposing S-S bonds	1.48801287843472	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting keto- and enol-groups	1.37876060576659	bayes_pls_golite062009
catalytic activity	1.04263226837398	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	0.25957505753521	bayes_pls_golite062009
isomerase activity	0.24662332270942	bayes_pls_golite062009
disulfide oxidoreductase activity	0.22354310938224	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: