YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375154, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	186 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375154, gi|....

Description	E-value	Query Range	Subject Range
gi\|32474502, gi\|... - gi\|32474502\|ref\|NP_867496.1\| hypothetical protein RB6850 [Rhodopirellula baltica SH 1], gi\|32445041\|...	135.0	[0..2]	[178..66]
gi\|82718696, gi\|... - gi\|82743938\|ref\|ZP_00906550.1\| pilin, putative [Shewanella sp. W3-18-1], gi\|82718696\|gb\|EAP53650.1\| ... gi\|77813673, gi\|... - gi\|77813673\|ref\|ZP_00812947.1\| pilin, putative [Shewanella putrefaciens CN-32], gi\|77811452\|gb\|EAO95...	125.0	[0..7]	[186..1]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRDRLQGSS PQSAGFTLIE LVVVIIVLGV LAVVALPKFI NVQQDAQIAT VKAAGAGFKS  60
   61 GLNLARSVWA VKVGSGPKED LPVFGTAQSE QVDFNANGWP VQHYIYGNEA SPSLDNVEDC 120
  121 VSVWEVLFQN SQPSVSRLNI DATETDYKAS YISPNQCRYF YRANDKLSIY YDSRTGTVTT 180
  181 DLDPNS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.0
Match:	1ay2A
Description:	STRUCTURE OF THE FIBER-FORMING PROTEIN PILIN AT 2.6 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits