YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375130, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	318 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375130, gi|....

Description	E-value	Query Range	Subject Range
SERA_METJA - D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii GN=serA PE=3 SV=1 SERA_METJA - D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / ...	330.0	[0..3]	[316..2]
GYAR_PYRFU - Glyoxylate reductase OS=Pyrococcus furiosus GN=gyaR PE=3 SV=1 GYAR_PYRFU - Glyoxylate reductase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=gyaR ...	326.0	[0..1]	[318..1]
GYAR_THELI - Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1 GYAR_THELN - Glyoxylate reductase OS=Thermococcus litoralis (strain ATCC 51850 / DSM 5473 / JCM 8560 / NS-C) GN=g...	326.0	[0..1]	[317..1]
GYAR_THEPD - Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1	324.0	[0..2]	[318..3]
gi\|14601656, gi\|... - gi\|5105521\|dbj\|BAA80834.1\| 347aa long hypothetical D-3-phosphoglycerate dehydrogenase [Aeropyrum per... gi\|7431353 - pir\|\|E72568 probable D-3-phosphoglycerate dehydrogenase APE1831 - Aeropyrum pernix (strain K1)	321.0	[0..1]	[318..13]
gi\|26345686 - gi\|26345686\|dbj\|BAC36494.1\| unnamed protein product [Mus musculus]	321.0	[0..4]	[318..8]
gi\|114558531 - gi\|114558531\|ref\|XP_001141039.1\| PREDICTED: phosphoglycerate dehydrogenase isoform 5 [Pan troglodyte...	320.0	[0..4]	[318..48]
GYAR_PYRKO - Glyoxylate reductase OS=Pyrococcus kodakaraensis GN=gyaR PE=3 SV=1 GYAR_THEKO - Glyoxylate reductase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=gyaR P...	319.0	[0..1]	[318..1]
gi\|5771523, gi\|2... - gi\|5771523\|gb\|AAD51415.1\|AF171237_1 3-phosphoglycerate dehydrogenase [Homo sapiens], gi\|2674062\|gb\|A...	319.0	[0..4]	[318..8]

Back

Predicted Domain #1

Region A:
Residues: [1-318]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIVVLDGET LNPGDLSWQA ISDLGKFSCF ARTPDAEIIP RAQDAEIVFT NKTPLDAKTL  60
   61 AQLPKLKYVG VLATGTNVVD IAAAKDLGIV VTNVPAYGHD AVAQMVFAHI LHHTQAVAAH 120
  121 HQAVAAGQWT SCSDFCFTLM PLQSLKGKTL GLIGYGDIGQ QVAKLALAFG MKVLVNTRTE 180
  181 PAHLPQGVSW TSRDKVLKES DILSLHCPLT PETNELINAQ TLELMKPQAL LINTARGGLI 240
  241 DEAALAVALT QGRVFAGVDV LSTEPPSMDN PLLSAPNIST SPHNAWATKE ARQNLLNIAT 300
  301 ENLKSFLQGN IRNCVNSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	86.522879
Match:	2g76A
Description:	No description for 2g76A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits