YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375111, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	495 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375111, gi|....

Description	E-value	Query Range	Subject Range
gi\|56474515, gi\|... - gi\|67484218\|ref\|XP_657329.1\| cell division cycle protein 48 [Entamoeba histolytica HM-1:IMSS], gi\|56...	316.0	[0..6]	[495..216]
Y1297_ARCFU - Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 ... Y1297_ARCFU, YC9... - (O28972) Cell division cycle protein 48 homolog AF1297, Cell division cycle protein 48 homolog AF_12...	315.0	[0..6]	[495..206]
gi\|5105048, gi\|1... - gi\|5105048\|dbj\|BAA80362.1\| cell division control protein 48, AAA family [Aeropyrum pernix K1], gi\|14... gi\|7435760 - pir\|\|D72613 probable transitional endoplasmic reticulum ATPase APE1367 - Aeropyrum pernix (strain K1...	313.0	[0..6]	[491..208]
gi\|18159541, gi\|... - gi\|18312110\|ref\|NP_558777.1\| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum aerophilum str....	312.0	[0..6]	[484..203]
gi\|119524342, gi... - gi\|119719222\|ref\|YP_919717.1\| AAA family ATPase, CDC48 subfamily protein [Thermofilum pendens Hrk 5]...	311.0	[0..6]	[470..207]
gi\|48477528, gi\|... - gi\|48477528\|ref\|YP_023234.1\| cell division cycle protein 48 [Picrophilus torridus DSM 9790], gi\|4843...	311.0	[0..6]	[489..213]
gi\|134091285, gi... - gi\|50255696\|gb\|EAL18428.1\| hypothetical protein CNBJ0700 [Cryptococcus neoformans var. neoformans B-... gi\|57229614, gi\|... - gi\|58260308\|ref\|XP_567564.1\| MMS2 [Cryptococcus neoformans var. neoformans JEC21], gi\|57229614\|gb\|AA...	309.0	[0..6]	[495..230]
gi\|44984686 - gi\|44984686\|gb\|AAS53529.1\| AFR158Wp [Ashbya gossypii ATCC 10895] gi\|44984686, gi\|... - gi\|45198676\|ref\|NP_985705.1\| AFR158Wp [Ashbya gossypii ATCC 10895], gi\|44984686\|gb\|AAS53529.1\| AFR15...	309.0	[0..6]	[487..239]

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Predicted Domain #1

Region A:
Residues: [1-495]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDIRDLTAV LRSKTPIVVI ETYEEYRVVD MLKRIANVLY QPLFTWSITQ GLTRVDKPMP  60
   61 AQKFNTEPGD ILGQIKATTQ QGIYVLCDFH PFVVEAPKNV RLLKEIALEY DALQHTLVLV 120
  121 SHAFEIPPEI KRYCAYFQLT LPSTSQLENL IYLEVDKVRT QGIPLNVDDK AVVKLAENLR 180
  181 GVTLDDARRL IHKAIVDDGA ITHSDVDLIN KAKFQLLDLN GILQFEYDTS DFSQIAGLHN 240
  241 LKKWLKQRAP AAHSPQGVSA AAQIDTPKGV LLLGVQGSGK SLAAKAVAGV WQRPLLRLDM 300
  301 GALYNKYIGE TEKNLRNALE LADMMSPCIL WIDEIEKGLS GSNSDQGIST RILGTLLTWM 360
  361 AERKSEVFVV ATANDIQALP PELMRKGRMD EIFFVDLPDE TIRKAIFLIH CQRRGIDVSR 420
  421 LDLAQLSRHS QGFSGAEIEQ AVIAAMYSAR SLGRTLDQDL LLEELTKTRP LSIVMGDKIN 480
  481 ALRQWAAGRT VNAHE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.09691
Match:	1oz4A
Description:	VCP/p97
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits