YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349860, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	288 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349860, gi|....

Description	E-value	Query Range	Subject Range
gi\|75823716, gi\|... - gi\|75823716\|ref\|ZP_00753200.1\| COG0031: Cysteine synthase [Vibrio cholerae RC385], gi\|254224066\|ref\|... gi\|254850776, gi... - gi\|75829240\|ref\|ZP_00758550.1\| COG0031: Cysteine synthase [Vibrio cholerae MO10], gi\|254850776\|ref\|Z... gi\|227116913, gi... - gi\|75825908\|ref\|ZP_00755343.1\| COG0031: Cysteine synthase [Vibrio cholerae O395], gi\|227116913\|ref\|Y... gi\|75815684, gi\|... - gi\|75815684\|ref\|ZP_00746181.1\| COG0031: Cysteine synthase [Vibrio cholerae V52], gi\|121728568\|ref\|ZP... gi\|229368829, gi... - gi\|229606174\|ref\|YP_002876822.1\| cysteine synthase B [Vibrio cholerae MJ-1236], gi\|229368829\|gb\|ACQ5... gi\|229338779, gi... - gi\|229525198\|ref\|ZP_04414603.1\| cysteine synthase B [Vibrio cholerae bv. albensis VL426], gi\|2293387... gi\|229344346, gi... - gi\|229519657\|ref\|ZP_04409100.1\| cysteine synthase B [Vibrio cholerae RC9], gi\|229344346\|gb\|EEO09321.... gi\|229507148, gi... - gi\|229507148\|ref\|ZP_04396654.1\| cysteine synthase B [Vibrio cholerae BX 330286], gi\|229355893\|gb\|EEO... gi\|227008608, gi... - gi\|227080720\|ref\|YP_002809271.1\| cysteine synthase B [Vibrio cholerae M66-2], gi\|227008608\|gb\|ACP048... gi\|121590696, gi... - gi\|121590696\|ref\|ZP_01678029.1\| cysteine synthase B [Vibrio cholerae 2740-80], gi\|121547482\|gb\|EAX57... gi\|153223825, gi... - gi\|153223825\|ref\|ZP_01954080.1\| cysteine synthase B [Vibrio cholerae MAK 757], gi\|124118002\|gb\|EAY36... gi\|15640559, gi\|... - gi\|9654964\|gb\|AAF93705.1\| cysteine synthase B [Vibrio cholerae O1 biovar El Tor str. N16961], gi\|156... gi\|153819104, gi... - gi\|153819104\|ref\|ZP_01971771.1\| cysteine synthase B [Vibrio cholerae NCTC 8457], gi\|126510336\|gb\|EAZ... gi\|11269065 - pir\|\|D82312 cysteine synthase (EC 4.2.99.8) [similarity] - Vibrio cholerae (strain N16961 serogroup ... gi\|229353915, gi... - gi\|229508990\|ref\|ZP_04398478.1\| cysteine synthase B [Vibrio cholerae B33], gi\|229353915\|gb\|EEO18849....	298.0	[0..2]	[288..6]
gi\|36784774, gi\|... - gi\|37525347\|ref\|NP_928691.1\| cysteine synthase B [Photorhabdus luminescens subsp. laumondii TTO1], g...	297.0	[0..2]	[288..3]
gi\|254226842, gi... - gi\|75819257\|ref\|ZP_00749346.1\| COG0031: Cysteine synthase [Vibrio cholerae V51], gi\|254226842\|ref\|ZP...	297.0	[0..2]	[288..6]
gi\|89081154, gi\|... - gi\|89094555\|ref\|ZP_01167493.1\| cysteine synthase B [Oceanospirillum sp. MED92], gi\|89081154\|gb\|EAR60...	295.0	[0..2]	[288..7]
gi\|50086082, gi\|... - gi\|50086082\|ref\|YP_047592.1\| cysteine synthase B [Acinetobacter sp. ADP1], gi\|49532058\|emb\|CAG69770....	294.0	[0..3]	[288..15]
gi\|77960917, gi\|... - gi\|77960917\|ref\|ZP_00824769.1\| COG0031: Cysteine synthase [Yersinia mollaretii ATCC 43969], gi\|23879...	293.0	[0..1]	[287..1]
gi\|73663552, gi\|... - gi\|73663552\|ref\|YP_302333.1\| cysteine synthase [Staphylococcus saprophyticus subsp. saprophyticus AT...	293.0	[0..3]	[288..9]
gi\|251806688, gi... - gi\|251809820\|ref\|ZP_04824293.1\| cysteine synthase [Staphylococcus epidermidis BCM-HMP0060], gi\|25180... gi\|242241598, gi... - gi\|242241598\|ref\|ZP_04796043.1\| cysteine synthase [Staphylococcus epidermidis W23144], gi\|242234979\|... CYSK_STAEQ - Cysteine synthase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=cysK PE=3 SV=1 CYSK_STAEP - (Q8CMT6) Cysteine synthase (EC 2.5.1.47) (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyas... CYSK_STAES - Cysteine synthase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=cysK PE=3 SV=1	292.0	[0..3]	[288..9]
gi\|70727496, gi\|... - gi\|70727496\|ref\|YP_254412.1\| cysteine synthase [Staphylococcus haemolyticus JCSC1435], gi\|68448222\|d... gi\|228476212, gi... - gi\|228476212\|ref\|ZP_04060915.1\| cysteine synthase A [Staphylococcus hominis SK119], gi\|228269697\|gb\|...	292.0	[0..3]	[288..9]
gi\|76882629, gi\|... - gi\|77164315\|ref\|YP_342840.1\| cysteine synthase B [Nitrosococcus oceani ATCC 19707], gi\|76882629\|gb\|A...	290.0	[0..2]	[287..8]

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Predicted Domain #1

Region A:
Residues: [1-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIEACIGQT PLVRLQRLDC GSSTVLLKLE GNNPAGSVKD RAALNMINQA ELRQEIAPGD  60
   61 TLIEATSGNT GIALAMAAAI KGYKMILIMP SNSTQERKDA MQAYGAELLL VDNMEAARDL 120
  121 ALALQAEGKG KVLDQFNNQD NANAHFLTTG PEIWQQSQGK ITHFVSSMGT TGTIMGVSKY 180
  181 LKSRNPDITI VGLQPADGSS IPGIRRWPQE YLPGIFDAAR VDLMMDIEEQ DAKAMARALA 240
  241 REEGICAGVS SGGAVYAALE LARQYPGSVV VAIVCDRGDR YLSSGLFS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.69897
Match:	2bhtA
Description:	Crystal Structure
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
cysteine synthase activity	5.18562032111987	bayes_pls_golite062009
catalytic activity	2.38994231321972	bayes_pls_golite062009
lyase activity	1.87743897464083	bayes_pls_golite062009
cystathionine beta-synthase activity	1.4517088142802	bayes_pls_golite062009
tryptophan synthase activity	1.04832999357666	bayes_pls_golite062009
carbon-oxygen lyase activity	0.923824749425553	bayes_pls_golite062009
threonine synthase activity	0.727838845253199	bayes_pls_golite062009
ammonia-lyase activity	0.476674617721478	bayes_pls_golite062009
L-threonine ammonia-lyase activity	0.37325071016009	bayes_pls_golite062009
carbon-nitrogen lyase activity	0.249761226675912	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: