YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349857, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	440 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349857, gi|....

Description	E-value	Query Range	Subject Range
gi\|20808918 - gi\|20808918\|ref\|NP_624089.1\| Sensory transduction histidine kinase [Thermoanaerobacter tengcongensis... gi\|20808918, gi\|... - gi\|20808918\|ref\|NP_624089.1\| sensory transduction histidine kinase [Thermoanaerobacter tengcongensis...	234.0	[0..17]	[438..5]
gi\|166853488, gi... - gi\|167039248\|ref\|YP_001662233.1\| integral membrane sensor signal transduction histidine kinase [Ther... gi\|241904558, gi... - gi\|241904558\|ref\|ZP_04789245.1\| histidine kinase [Thermoanaerobacter brockii subsp. finnii Ako-1], g... gi\|76588655, gi\|... - gi\|76795887\|ref\|ZP_00778257.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	229.0	[0..105]	[438..135]
gi\|45358866, gi\|... - gi\|45358866\|ref\|NP_988423.1\| sensory transduction histidine kinase [Methanococcus maripaludis S2], g...	227.0	[0..29]	[437..201]
gi\|91203275 - gi\|91203275\|emb\|CAJ72914.1\| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis]	226.0	[0..151]	[438..210]
gi\|113971342, gi... - gi\|113971342\|ref\|YP_735135.1\| periplasmic sensor signal transduction histidine kinase [Shewanella sp...	219.0	[0..36]	[440..18]
gi\|20092217, gi\|... - gi\|20092217\|ref\|NP_618292.1\| sensory transduction histidine kinase [Methanosarcina acetivorans C2A],...	219.0	[0..50]	[438..365]
gi\|46113643, gi\|... - gi\|68054670\|ref\|ZP_00538820.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	218.0	[0..12]	[439..1]
gi\|254750825 - gi\|254750825\|ref\|ZP_05202864.1\| sensor histidine kinase [Bacillus anthracis str. Vollum] gi\|254741274 - gi\|254741274\|ref\|ZP_05198962.1\| sensor histidine kinase [Bacillus anthracis str. Kruger B] gi\|254721328 - gi\|254721328\|ref\|ZP_05183118.1\| sensor histidine kinase [Bacillus anthracis str. A1055] gi\|49178772, gi\|... - gi\|49184845\|ref\|YP_028097.1\| sensor histidine kinase [Bacillus anthracis str. Sterne], gi\|49178772\|g... gi\|47527271, gi\|... - gi\|47527271\|ref\|YP_018620.1\| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'], gi\|4... gi\|30262005, gi\|... - gi\|30262005\|ref\|NP_844382.1\| sensor histidine kinase [Bacillus anthracis str. Ames], gi\|30256631\|gb\|... gi\|49477455, gi\|... - gi\|49477455\|ref\|YP_036139.1\| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. ... gi\|254684570 - gi\|254684570\|ref\|ZP_05148430.1\| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066] gi\|195990438, gi... - gi\|196036949\|ref\|ZP_03104328.1\| sensor histidine kinase [Bacillus cereus W], gi\|195990438\|gb\|EDX5442...	217.0	[0..37]	[436..57]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTRLPLRPR GLEQLSTTVK RLFISLYLLL SLSFLGIGWT LDSLWKKNVD ENNPLDAPLV  60
   61 AFAQLLTQLP EESRRDYLSA LPTDPQLPLN LLSPDQIALP KDQILTSNHL VTTTTSEGEQ 120
  121 FQFIQV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [127-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEQVLMAGPI EIDPRADLRN LFTLFFYLSL AFVALIWVGP LSRDLSILRK ATKDFGEAKW  60
   61 DTRINLS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.91
Match:	2f95B
Description:	M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [194-440]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRSQVKPLAN TFNEMARHIS ALIENQKHLS NAVSHEIRTP LARLKFALAL MPMYCKPDSD  60
   61 EQTRQDFLNE MQLDIKEMEN LLQELLTYAS LESQREGIPL DEYDLITLIN QCIKRLSTLS 120
  121 ETPITLHADM DALPLVGEPA LIERALQNLL TNAQRFARHQ ILIEVSQTPQ RVTLSVSNDG 180
  181 EPIPEVDLPK VFEPFYRSQS VQNGNKGHGL GLAIIKRIMQ RHQGEVSVSS NPTQTRFTLS 240
  241 WPKKREI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.0
Match:	2c2aA
Description:	Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits