YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375045, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	488 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375045, gi|....

Description	E-value	Query Range	Subject Range
gi\|28897277, gi\|... - gi\|28897277\|ref\|NP_796882.1\| sodium/alanine symporter [Vibrio parahaemolyticus RIMD 2210633], gi\|288... gi\|28805486 - gi\|28805486\|dbj\|BAC58766.1\| sodium/alanine symporter [Vibrio parahaemolyticus RIMD 2210633] gi\|153840330, gi... - gi\|153840330\|ref\|ZP_01992997.1\| sodium/alanine symporter [Vibrio parahaemolyticus AQ3810], gi\|149746...	604.0	[0..2]	[474..1]
gi\|37197583, gi\|... - gi\|37678842\|ref\|NP_933451.1\| sodium/alanine symporter [Vibrio vulnificus YJ016], gi\|37197583\|dbj\|BAC...	599.0	[0..2]	[474..16]
gi\|27360116, gi\|... - gi\|27363999\|ref\|NP_759527.1\| Na+/alanine symporter [Vibrio vulnificus CMCP6], gi\|27360116\|gb\|AAO0905...	595.0	[0..2]	[474..1]
gi\|90413174, gi\|... - gi\|90413174\|ref\|ZP_01221170.1\| putative sodium/alanine symporter [Photobacterium profundum 3TCK], gi...	594.0	[0..2]	[476..1]
gi\|85834824, gi\|... - gi\|86147396\|ref\|ZP_01065709.1\| sodium/alanine symporter [Vibrio sp. MED222], gi\|85834824\|gb\|EAQ52969... gi\|218321557, gi... - gi\|218708538\|ref\|YP_002416159.1\| putative sodium/alanine symporter [Vibrio splendidus LGP32], gi\|218...	593.0	[0..2]	[475..1]
gi\|197335067, gi... - gi\|197335067\|ref\|YP_002156909.1\| amino-acid carrier protein AlsT [Vibrio fischeri MJ11], gi\|19731655... gi\|59480818, gi\|... - gi\|59712717\|ref\|YP_205493.1\| transporter [Vibrio fischeri ES114], gi\|59480818\|gb\|AAW86605.1\| predict...	593.0	[0..2]	[473..1]
gi\|150423894, gi... - gi\|254285984\|ref\|ZP_04960945.1\| sodium/alanine symporter [Vibrio cholerae AM-19226], gi\|197752469\|re... gi\|153825899, gi... - gi\|153825899\|ref\|ZP_01978566.1\| sodium/alanine symporter [Vibrio cholerae MZO-2], gi\|149740397\|gb\|ED... gi\|147674420, gi... - gi\|227118801\|ref\|YP_002820697.1\| sodium/alanine symporter [Vibrio cholerae O395], gi\|227014251\|gb\|AC... gi\|9656925, gi\|1... - gi\|9656925\|gb\|AAF95499.1\| sodium/alanine symporter [Vibrio cholerae O1 biovar El Tor str. N16961], g... gi\|11277939 - pir\|\|H82085 sodium/alanine symporter VC2356 [imported] - Vibrio cholerae (strain N16961 serogroup O1... gi\|121546851, gi... - gi\|121591292\|ref\|ZP_01678586.1\| sodium/alanine symporter [Vibrio cholerae 2740-80], gi\|121546851\|gb\|... gi\|229349172, gi... - gi\|229513991\|ref\|ZP_04403453.1\| sodium/alanine symporter [Vibrio cholerae TMA 21], gi\|229349172\|gb\|E... gi\|227082480, gi... - gi\|227082480\|ref\|YP_002811031.1\| sodium/alanine symporter [Vibrio cholerae M66-2], gi\|227010368\|gb\|A... gi\|153803104, gi... - gi\|153803104\|ref\|ZP_01957690.1\| sodium/alanine symporter [Vibrio cholerae MZO-3], gi\|124121355\|gb\|EA... gi\|153223033, gi... - gi\|153223033\|ref\|ZP_01953608.1\| sodium/alanine symporter [Vibrio cholerae MAK 757], gi\|124118456\|gb\|... gi\|254845183, gi... - gi\|254849478\|ref\|ZP_05238828.1\| sodium/alanine symporter [Vibrio cholerae MO10], gi\|254845183\|gb\|EET...	590.0	[0..2]	[473..1]
gi\|91188923, gi\|... - gi\|91226792\|ref\|ZP_01261445.1\| sodium/alanine symporter [Vibrio alginolyticus 12G01], gi\|91188923\|gb...	589.0	[0..2]	[474..1]
gi\|54307765, gi\|... - gi\|54307765\|ref\|YP_128785.1\| putative sodium/alanine symporter [Photobacterium profundum SS9], gi\|46...	589.0	[0..2]	[476..1]
gi\|229519362, gi... - gi\|229519362\|ref\|ZP_04408805.1\| sodium/alanine symporter [Vibrio cholerae RC9], gi\|229344051\|gb\|EEO0... gi\|229352191, gi... - gi\|229512226\|ref\|ZP_04401705.1\| sodium/alanine symporter [Vibrio cholerae B33], gi\|229352191\|gb\|EEO1... gi\|229355083, gi... - gi\|229507578\|ref\|ZP_04397083.1\| sodium/alanine symporter [Vibrio cholerae BX 330286], gi\|229355083\|g... gi\|75827631 - gi\|75827631\|ref\|ZP_00757066.1\| COG1115: Na+/alanine symporter [Vibrio cholerae O395] gi\|75828781, gi\|... - gi\|75828781\|ref\|ZP_00758122.1\| COG1115: Na+/alanine symporter [Vibrio cholerae MO10], gi\|116188204\|r... gi\|229369739, gi... - gi\|229607084\|ref\|YP_002877732.1\| sodium/alanine symporter [Vibrio cholerae MJ-1236], gi\|229369739\|gb... gi\|229528652, gi... - gi\|229528652\|ref\|ZP_04418042.1\| sodium/alanine symporter [Vibrio cholerae 12129(1)], gi\|229332426\|gb... gi\|229341723, gi... - gi\|229521191\|ref\|ZP_04410611.1\| sodium/alanine symporter [Vibrio cholerae TM 11079-80], gi\|229341723...	584.0	[0..9]	[473..1]

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Predicted Domain #1

Region A:
Residues: [1-488]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLETIVNFLN ALLWGKLLVY GLVGAGLYFT LRLVFIQLTH FKHSLKIMTM SRQGCESGLS  60
   61 SFQVFCTSMA ARVGAGNMAG VAVAIGAAGP GAVFWMWLIA MLGMATAMVE STLAQVYKVR 120
  121 DANGQFRGGP SYYMEKGLGQ RWMGVLFAFF LIIAFGLVFN AVQANTITGA MERVFGFDPT 180
  181 YVGIGLVLAS GFVIMGGLRK VARVSEFIVP IMALAYILIA FIIVLFNLEQ LPAVISLIVK 240
  241 SAFGWQEAAA GGVAYTVAQA MQAGIARGLF SNEAGMGSAA NVAASASPNP NHPASQGFVQ 300
  301 MMGVFVDTIV ICTATAAIIL LSGDIGSSDD GIRLTINAMS NHVGDWGGAF IAVAIFLFCF 360
  361 TSIIANYSYA ETNVMFLTGN STKALPLFRL CVLGMVMFGS VAKISLVWNL ADVSMGLMAT 420
  421 VNIVALLLLS GLAIRVINDY CDQLKSGKMP EFDRSKFPEL MEQLDDGIWQ DNSVNELAKA 480
  481 PSESAISR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.15
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits