YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375025, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375025, gi|....

Description	E-value	Query Range	Subject Range
gi\|151364283, gi... - gi\|152999665\|ref\|YP_001365346.1\| type IV pilus biogenesis protein, putative [Shewanella baltica OS18... gi\|217499516, gi... - gi\|217974381\|ref\|YP_002359132.1\| type IV pilus biogenesis protein, putative [Shewanella baltica OS22... gi\|68518156, gi\|... - gi\|68544153\|ref\|ZP_00583823.1\| type IV pilus biogenesis protein, putative [Shewanella baltica OS155]...	117.0	[0..1]	[164..1]
gi\|160874286, gi... - gi\|160874286\|ref\|YP_001553602.1\| type IV pilus biogenesis protein, putative [Shewanella baltica OS19...	115.0	[0..1]	[164..1]
gi\|71484123, gi\|... - gi\|71550692\|ref\|ZP_00670784.1\| Fimbrial protein pilin [Nitrosomonas eutropha C71], gi\|71484123\|gb\|EA...	103.0	[0..5]	[160..6]
gi\|48781360, gi\|... - gi\|91785781\|ref\|YP_560987.1\| general secretion pathway protein G [Burkholderia xenovorans LB400], gi...	102.0	[0..3]	[131..17]
gi\|213971059, gi... - gi\|213971059\|ref\|ZP_03399179.1\| type IV pilus biogenesis protein [Pseudomonas syringae pv. tomato T1... tr\|Q889E0\|Q889E0... - Type IV pilus biogenesis protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_0810 PE... gi\|28868038, gi\|... - gi\|28868038\|ref\|NP_790657.1\| type IV pilus biogenesis protein [Pseudomonas syringae pv. tomato str. ...	100.0	[0..3]	[156..1]
gi\|68531143, gi\|... - gi\|94312315\|ref\|YP_585525.1\| general secretion pathway protein G [Ralstonia metallidurans CH34], gi\|...	100.0	[0..2]	[131..16]
gi\|78061923, gi\|... - gi\|78061923\|ref\|YP_371831.1\| general secretion pathway protein G [Burkholderia sp. 383], gi\|77969808...	100.0	[0..2]	[131..17]
gi\|71733910, gi\|... - gi\|71733910\|ref\|YP_273017.1\| type IV pilus biogenesis protein [Pseudomonas syringae pv. phaseolicola...	100.0	[0..3]	[156..1]
gi\|134137346, gi... - gi\|67546892\|ref\|ZP_00424801.1\| General secretion pathway protein G [Burkholderia vietnamiensis G4], ...	100.0	[0..3]	[131..13]

Back

Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTISKGFTL VELMVTIAIA ALLLSVGVPS FTAIYEATRS ANEMQKINDL FAFARNQAVN  60
   61 YGATVTVCPY AATPCGNDWT KGFSVYIENN GAKKVLKVID GFSSKDTISL TGPTDKTVNF 120
  121 TPDGLVSTET SIIYCPSGES DGSKSIKIST SGLIKEGSDN QSCS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.522879
Match:	1ay2A
Description:	STRUCTURE OF THE FIBER-FORMING PROTEIN PILIN AT 2.6 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits