YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349747, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	378 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349747, gi|....

Description	E-value	Query Range	Subject Range
gi\|20806755 - gi\|20806755\|ref\|NP_621926.1\| N-acetylglucosamine-6-phosphate deacetylase [Thermoanaerobacter tengcon... gi\|223490117, gi... - gi\|254478128\|ref\|ZP_05091511.1\| N-acetylglucosamine-6-phosphate deacetylase [Carboxydibrachium pacif... gi\|20806755, gi\|... - gi\|20806755\|ref\|NP_621926.1\| N-acetylglucosamine-6-phosphate deacetylase [Thermoanaerobacter tengcon...	216.0	[0..2]	[377..9]
gi\|167038854, gi... - gi\|167038854\|ref\|YP_001661839.1\| N-acetylglucosamine-6-phosphate deacetylase [Thermoanaerobacter sp.... gi\|242231182, gi... - gi\|242257294\|ref\|ZP_04802164.1\| N-acetylglucosamine-6-phosphate deacetylase [Thermoanaerobacter sp. ...	209.0	[0..1]	[373..1]
gi\|229518044, gi... - gi\|229518044\|ref\|ZP_04407488.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae RC9], g... NAGA_VIBCH - N-acetylglucosamine-6-phosphate deacetylase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El T... gi\|229608426, gi... - gi\|229608426\|ref\|YP_002879074.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae MJ-123... gi\|121548417, gi... - gi\|121587334\|ref\|ZP_01677105.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae 2740-80... gi\|124114488, gi... - gi\|153216038\|ref\|ZP_01950243.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae 1587], ... gi\|153222754, gi... - gi\|153222754\|ref\|ZP_01953413.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae MAK 757... gi\|254843830, gi... - gi\|75829806\|ref\|ZP_00759098.1\| COG1820: N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae... gi\|153818603, gi... - gi\|153818603\|ref\|ZP_01971270.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae NCTC 84... gi\|146316000, gi... - gi\|75826303\|ref\|ZP_00755738.1\| COG1820: N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae... gi\|153822689, gi... - gi\|229510923\|ref\|ZP_04400402.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae B33], g... gi\|75816355, gi\|... - gi\|75816355\|ref\|ZP_00746828.1\| COG1820: N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae... gi\|148874622, gi... - gi\|153829879\|ref\|ZP_01982546.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae 623-39]... NAGA_VIBCH - N-acetylglucosamine-6-phosphate deacetylase OS=Vibrio cholerae GN=nagA PE=1 SV=2 gi\|227009056, gi... - gi\|227081168\|ref\|YP_002809719.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae M66-2]... gi\|229505407, gi... - gi\|229505407\|ref\|ZP_04394917.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae BX 3302...	208.0	[0..2]	[372..1]
gi\|254291868, gi... - gi\|254291868\|ref\|ZP_04962651.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae AM-1922... gi\|149740051, gi... - gi\|153826191\|ref\|ZP_01978858.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae MZO-2],... gi\|183179420, gi... - gi\|183179420\|ref\|ZP_02957631.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae MZO-3],... gi\|229333686, gi... - gi\|229529912\|ref\|ZP_04419302.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae 12129(1... gi\|229350525, gi... - gi\|229512444\|ref\|ZP_04401917.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae TMA 21]... gi\|2541901 - gi\|2541901\|dbj\|BAA22834.1\| N-acetylglucosamine 6-phosphate deacetylase [Vibrio cholerae non-O1] gi\|7467512 - pir\|\|JC5649 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) - Vibrio cholerae (strain non-...	206.0	[0..2]	[372..1]
gi\|196198333, gi... - gi\|196252200\|ref\|ZP_03150861.1\| N-acetylglucosamine-6-phosphate deacetylase [Clostridium thermocellu... gi\|125974675, gi... - gi\|67916859\|ref\|ZP_00510549.1\| N-acetylglucosamine-6-phosphate deacetylase [Clostridium thermocellum...	205.0	[0..2]	[375..4]
gi\|86148386, gi\|... - gi\|86148386\|ref\|ZP_01066678.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio sp. MED222], gi\|8...	204.0	[0..2]	[372..1]
gi\|241902536, gi... - gi\|241902536\|ref\|ZP_04787269.1\| N-acetylglucosamine-6-phosphate deacetylase [Thermoanaerobacter broc... gi\|167038412, gi... - gi\|76795488\|ref\|ZP_00777861.1\| N-acetylglucosamine-6-phosphate deacetylase [Thermoanaerobacter ethan...	204.0	[0..1]	[376..1]
gi\|89098766, gi\|... - gi\|89098766\|ref\|ZP_01171647.1\| N-acetylglucosamine-6-phosphate deacetylase [Bacillus sp. NRRL B-1491...	204.0	[0..2]	[375..3]
gi\|117613882, gi... - gi\|78686625\|ref\|ZP_00851390.1\| N-acetylglucosamine-6-phosphate deacetylase [Shewanella sp. ANA-3], g... gi\|78508900, gi\|... - gi\|78691695\|ref\|ZP_00856296.1\| N-acetylglucosamine-6-phosphate deacetylase [Shewanella sp. MR-7], gi...	203.0	[0..1]	[378..1]
gi\|27363662, gi\|... - gi\|27363662\|ref\|NP_759190.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio vulnificus CMCP6], ...	203.0	[0..2]	[372..1]

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Predicted Domain #1

Region A:
Residues: [1-378]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFTLIAEQL FDGESFHQDV PVTIEDGLIA SFDTALGAKE VRYTGTLVPG FIDVQVNGGG  60
   61 GALFNTSPTV ACIETIGKAH ARFGTTGFLP TLITDNVQVM AKAADAVALA VAQKSAGVLG 120
  121 VHFEGPHLSV PKKGVHPQGF IREITEAELA IFCRQDLGIR VVTLAPENVS PEVIRLLVES 180
  181 GVKVCLGHSN ADYDTVVAAL KAGATGFTHL YNAMSPLGSR EPGVVGAAIE SETAWCGLIV 240
  241 DGHHVHPAAA RIALRAKPRG KMMLVTDAMP PVGMDDETSF ELFGTQVLRV GDRLNAVTGE 300
  301 LAGCVLDMAS AVHNTVNMLG LPLGEALRMA ALYPAEFLGI ADSVGRLAVG QRADLVLLDN 360
  361 QYQVLANYIA GNAVYVRP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.30103
Match:	2p53A
Description:	No description for 2p53A was found.

Predicted functions:

Term	Confidence	Notes
hydrolase activity	2.00269452684807	bayes_pls_golite062009
N-acetylglucosamine-6-phosphate deacetylase activity	1.87049065683349	bayes_pls_golite062009
deaminase activity	1.75073958887958	bayes_pls_golite062009
catalytic activity	1.70199291046899	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: