YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375007, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	435 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375007, gi|....

Description	E-value	Query Range	Subject Range
SNF3 - Plasma membrane low glucose sensor that regulates glucose transport; contains 12 predicted transmemb... SNF3_YEAST - High-affinity glucose transporter SNF3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=S...	187.0	[0..16]	[434..102]
gi\|115402325, gi... - gi\|115402325\|ref\|XP_001217239.1\| hypothetical protein ATEG_08653 [Aspergillus terreus NIH2624], gi\|1...	182.0	[0..4]	[434..39]
gi\|169764102 - gi\|169764102\|ref\|XP_001727951.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83770979 - gi\|83770979\|dbj\|BAE61112.1\| unnamed protein product [Aspergillus oryzae]	181.0	[0..8]	[433..208]
gi\|60467752, gi\|... - gi\|60467752\|gb\|EAL65769.1\| hypothetical protein DDB0191430 [Dictyostelium discoideum], gi\|29500764\|g... gi\|60467752, gi\|... - gi\|66810832\|ref\|XP_639123.1\| major facilitator superfamily transporter [Dictyostelium discoideum AX4...	180.0	[0..6]	[397..595]
gi\|40742111, gi\|... - gi\|67541865\|ref\|XP_664700.1\| hypothetical protein AN7096.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	171.0	[0..17]	[434..1159]
gi\|49526727 - gi\|49526727\|emb\|CAG60354.1\| unnamed protein product [Candida glabrata] gi\|50289971, gi\|... - gi\|50289971\|ref\|XP_447417.1\| hypothetical protein CAGL0I03872g [Candida glabrata CBS138], gi\|4952672...	169.0	[0..16]	[434..121]
KHT2_KLULC - Hexose transporter 2 OS=Kluyveromyces lactis GN=KHT2 PE=3 SV=1	169.0	[0..13]	[434..64]
orf19.2020, orf1... - HGT6 CGDID:CAL0004351 Assembly 19, Contig19-10139 (66413, 64761) CDS, reverse complemented, translat... gi\|68472555, gi\|... - gi\|68472808\|ref\|XP_719469.1\| potential hexose transporter [Candida albicans SC5314], gi\|68472555\|ref...	168.0	[0..13]	[434..52]

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Predicted Domain #1

Region A:
Residues: [1-435]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLDKSQQKS SFLPMAIVAA LFFILGFATW LNGSLMPYLK QILQLNPFQA SLILFSFYIA  60
   61 VTFTALPSAW VIRKVGYKNG MALGMGVMMI AGLLFIPAAK TQVFALFLFA QLVMGAGQTL 120
  121 LQTAVNPYVV RLGPEESAAA RVSVMGILNK GAGVIAPLVF SALILDSFKD RIGTTLTQVQ 180
  181 IDEMANGLVL PYLGMAVFIG ILALAVKKSP LPELSNEDEV ADHTDKSQIK AALSHPNLAL 240
  241 GVLALFVYVA VEVIAGDTIG TFALSLGIDH YGVMTSYTMV CMVLGYILGI LLIPRVISQP 300
  301 TALMISAILG LLLTLGILFG DNNSYAIANL LLVPFGGVAL PDTLLLIAFL GLANAIVWPA 360
  361 VWPLALSGMG KLTSTGSALL IMGIAGGAFG PVSWGLMSSA TDMGQQGGYM VMLPCYLFIL 420
  421 FYAVKGHKMR SWSAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	1pw4A
Description:	Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
carbohydrate transmembrane transporter activity	3.16484357749134	bayes_pls_golite062009
sugar transmembrane transporter activity	2.77541159976289	bayes_pls_golite062009
transporter activity	2.54286095434601	bayes_pls_golite062009
sugar:hydrogen symporter activity	2.21878849047485	bayes_pls_golite062009
cation:sugar symporter activity	2.21878849047485	bayes_pls_golite062009
transmembrane transporter activity	2.01247278444729	bayes_pls_golite062009
monosaccharide transmembrane transporter activity	1.85936140095795	bayes_pls_golite062009
substrate-specific transporter activity	1.77039368764865	bayes_pls_golite062009
solute:hydrogen symporter activity	1.68455852928739	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.66673693200184	bayes_pls_golite062009
hexose phosphate transmembrane transporter activity	0.771603913181441	bayes_pls_golite062009
glucose-6-phosphate transmembrane transporter activity	0.771603913181441	bayes_pls_golite062009
active transmembrane transporter activity	0.33203350453105	bayes_pls_golite062009
polyol transmembrane transporter activity	0.24475883286552	bayes_pls_golite062009
alcohol transmembrane transporter activity	0.24475883286552	bayes_pls_golite062009
glycerol transmembrane transporter activity	0.2309068592963	bayes_pls_golite062009
ion transmembrane transporter activity	0.18188709249385	bayes_pls_golite062009
binding	0.105551689569449	bayes_pls_golite062009
glycerol-3-phosphate transmembrane transporter activity	1.26964387230144E-4	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: