YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349701, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	381 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349701, gi|....

Description	E-value	Query Range	Subject Range
gi\|75176888, gi\|... - gi\|75176888\|ref\|ZP_00697004.1\| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Shigella boyd...	385.0	[0..6]	[370..2]
gi\|238899702, gi... - gi\|238899702\|ref\|YP_002925498.1\| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-a... EG11321 - fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) ur... gi\|85674554, gi\|... - gi\|89107284\|ref\|AP_001064.1\| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and 5-amin... EG11321 - fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) ur... gi\|170080000, gi... - gi\|170080000\|ref\|YP_001729320.1\| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-a... RIBD_ECOLI - Riboflavin biosynthesis protein ribD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminas...	383.0	[0..6]	[370..2]
gi\|81244313, gi\|... - gi\|82542902\|ref\|YP_406849.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-am...	382.0	[0..6]	[370..2]
RIBD_HAEIN - Riboflavin biosynthesis protein RibD OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20... RIBD_HAEIN - Riboflavin biosynthesis protein ribD OS=Haemophilus influenzae GN=ribD PE=3 SV=1	376.0	[0..1]	[374..2]
gi\|48868660, gi\|... - gi\|68249531\|ref\|YP_248643.1\| riboflavin biosynthesis protein RibD [Haemophilus influenzae 86-028NP],...	376.0	[0..1]	[374..2]
gi\|75237204 - gi\|75237204\|ref\|ZP_00721251.1\| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Escherichia c...	375.0	[0..11]	[370..1]
gi\|75230139 - gi\|75230139\|ref\|ZP_00716643.1\| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Escherichia c...	375.0	[0..11]	[370..1]
gi\|32029994 - gi\|32029994\|ref\|ZP_00132922.1\| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Haemophilus s...	375.0	[0..2]	[374..5]
gi\|78691534, gi\|... - gi\|78691534\|ref\|ZP_00856145.1\| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C...	375.0	[0..1]	[381..1]
gi\|113461193, gi... - gi\|113461193\|ref\|YP_719262.1\| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-p...	375.0	[0..2]	[374..4]

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Predicted Domain #1

Region A:
Residues: [1-381]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNWSVLDNQM MSRAIQLARK GFYTTRPNPS VGCVIVNDNQ IVGEGYHQKA GEPHAEVHAL  60
   61 RMAGELARGA TAYVTLEPCS HYGRTPPCAL ALINIGVKRV VVAVEDPNPQ VGGRGIQMLR 120
  121 DAGIQVDVGL HRDEAYALNL GFMKRMESGL PWVTVKLAAS LDGKTALSNG VSKWITGPEA 180
  181 RRDVQRLRLR SCALITGIET VLADDPSLNV RYSELGSLRA QLSESQVLQP LRVVLDSRAR 240
  241 MPITAALFAI ESPILLVSTV SYSSDFMVQL PAHVTCLQLP AIEGRISLSA LLSYLGKSCN 300
  301 QVLIEAGATL AGAFIGSGLA DELVLYQAMK ILGGQGRNLL ELPDYQMMAD IPTLKLVDER 360
  361 KVGADTRFTL RLESNPSLAN K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	108.0
Match:	2g6vA
Description:	No description for 2g6vA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits