YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349693, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349693, gi|....

Description	E-value	Query Range	Subject Range
gi\|229681230, gi... - gi\|229901301\|ref\|ZP_04516423.1\| Phosphatidylglycerophosphatase A [Yersinia pestis Nepal516], gi\|2296... gi\|22124911, gi\|... - gi\|22124911\|ref\|NP_668334.1\| phosphatidylglycerophosphatase [Yersinia pestis KIM], gi\|21957748\|gb\|AA...	199.0	[0..7]	[161..11]
gi\|218930209, gi... - gi\|218930209\|ref\|YP_002348084.1\| phosphatidylglycerophosphatase A [Yersinia pestis CO92], gi\|1612334... gi\|166960486, gi... - gi\|167421567\|ref\|ZP_02313320.1\| phosphatidylglycerophosphatase A [Yersinia pestis biovar Orientalis ... gi\|167057250, gi... - gi\|167423080\|ref\|ZP_02314833.1\| phosphatidylglycerophosphatase A [Yersinia pestis biovar Mediaevalis... gi\|167470225 - gi\|167470225\|ref\|ZP_02334929.1\| phosphatidylglycerophosphatase A [Yersinia pestis FV-1] gi\|169752005, gi... - gi\|170025471\|ref\|YP_001721976.1\| phosphatidylglycerophosphatase A [Yersinia pseudotuberculosis YPIII... gi\|186697331, gi... - gi\|186894305\|ref\|YP_001871417.1\| phosphatidylglycerophosphatase A [Yersinia pseudotuberculosis PB1/+... Q66DV5\|Q66DV5_YERPS - Phosphatidylglycerophosphatase A - Yersinia pseudotuberculosis gi\|161484852 - gi\|161484852\|ref\|NP_668334.2\| phosphatidylglycerophosphatase A [Yersinia pestis KIM] gi\|25323022 - pir\|\|AC0386 phosphatidylglycerophosphatase (EC 3.1.3.27) [imported] - Yersinia pestis (strain CO92) gi\|77636303, gi\|... - gi\|77636303\|ref\|ZP_00798378.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Yersi... gi\|165926596, gi... - gi\|165926596\|ref\|ZP_02222428.1\| phosphatidylglycerophosphatase A [Yersinia pestis biovar Orientalis ... gi\|152962208, gi... - gi\|77631908\|ref\|ZP_00794494.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Yersi... gi\|166011042, gi... - gi\|166011042\|ref\|ZP_02231940.1\| phosphatidylglycerophosphatase A [Yersinia pestis biovar Antiqua str... gi\|51595288, gi\|... - gi\|51595288\|ref\|YP_069479.1\| phosphatidylglycerophosphatase A [Yersinia pseudotuberculosis IP 32953]... gi\|166213094, gi... - gi\|166213094\|ref\|ZP_02239129.1\| phosphatidylglycerophosphatase A [Yersinia pestis biovar Antiqua str... gi\|45435458, gi\|... - gi\|45440601\|ref\|NP_992140.1\| phosphatidylglycerophosphatase A [Yersinia pestis biovar Microtus str. ... gi\|167399623, gi... - gi\|167399623\|ref\|ZP_02305147.1\| phosphatidylglycerophosphatase A [Yersinia pestis biovar Antiqua str... gi\|229899352, gi... - gi\|229899352\|ref\|ZP_04514495.1\| phosphatidylglycerophosphatase A [Yersinia pestis biovar Orientalis ... gi\|229700985, gi... - gi\|229896062\|ref\|ZP_04511232.1\| phosphatidylglycerophosphatase A [Yersinia pestis Pestoides A], gi\|2... gi\|229838784, gi... - gi\|229838784\|ref\|ZP_04458943.1\| phosphatidylglycerophosphatase A [Yersinia pestis biovar Orientalis ... gi\|89105944, gi\|... - gi\|89105944\|ref\|ZP_01178455.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Yersi... gi\|108808664, gi... - gi\|108808664\|ref\|YP_652580.1\| phosphatidylglycerophosphatase A [Yersinia pestis Antiqua], gi\|1087805... gi\|108774722, gi... - gi\|108811074\|ref\|YP_646841.1\| phosphatidylglycerophosphatase A [Yersinia pestis Nepal516], gi\|108774... gi\|149364975, gi... - gi\|149364975\|ref\|ZP_01887010.1\| phosphatidylglycerophosphatase A [Yersinia pestis CA88-4125], gi\|149... gi\|145600073, gi... - gi\|145600073\|ref\|YP_001164149.1\| phosphatidylglycerophosphatase A [Yersinia pestis Pestoides F], gi\|...	197.0	[0..7]	[161..2]
gi\|56128682, gi\|... - gi\|56414425\|ref\|YP_151500.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enterica s... gi\|238911447 - gi\|238911447\|ref\|ZP_04655284.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteric... gi\|205351731, gi... - gi\|205351731\|ref\|YP_002225532.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteri... gi\|197094822, gi... - gi\|197363345\|ref\|YP_002142982.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteri... gi\|16501688, gi\|... - gi\|25323020\|pir\|\|AD0554 phosphatidylglycerophosphatase A [imported] - Salmonella enterica subsp. ent... gi\|16418925, gi\|... - gi\|16763800\|ref\|NP_459415.1\| phosphatidylglycerophosphatase A [Salmonella typhimurium LT2], gi\|16418... gi\|29142831, gi\|... - gi\|29142831\|ref\|NP_806173.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enterica s... gi\|16759397 - gi\|16759397\|ref\|NP_455014.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enterica s... gi\|213615895 - gi\|213615895\|ref\|ZP_03371721.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteric... gi\|213427854 - gi\|213427854\|ref\|ZP_03360604.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteric... gi\|213025238 - gi\|213025238\|ref\|ZP_03339685.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteric... lcl\|NC_016856.1_... - [gene=pgpA] [protein=phosphatidylglycerophosphatase A] [protein_id=YP_005236112.1] [location=473673.... gi\|206707704, gi... - gi\|207855901\|ref\|YP_002242552.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteri... gi\|224582258, gi... - gi\|224582258\|ref\|YP_002636056.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteri... gi\|214000377 - gi\|214000377\|ref\|ZP_03411112.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteric... gi\|213855377 - gi\|213855377\|ref\|ZP_03383617.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteric... gi\|213650171 - gi\|213650171\|ref\|ZP_03380224.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteric...	196.0	[0..6]	[161..8]
gi\|37679051, gi\|... - gi\|37679051\|ref\|NP_933660.1\| phosphatidylglycerophosphatase A [Vibrio vulnificus YJ016], gi\|37197793... gi\|27363791, gi\|... - gi\|27363791\|ref\|NP_759319.1\| phosphatidylglycerophosphatase A [Vibrio vulnificus CMCP6], gi\|27359908...	194.0	[0..7]	[163..2]
gi\|28805671, gi\|... - gi\|28897459\|ref\|NP_797064.1\| phosphatidylglycerophosphatase A [Vibrio parahaemolyticus RIMD 2210633]... gi\|28805671 - gi\|28805671\|dbj\|BAC58948.1\| phosphatidylglycerophosphatase A [Vibrio parahaemolyticus RIMD 2210633]	194.0	[0..8]	[159..3]
gi\|54307998, gi\|... - gi\|54307998\|ref\|YP_129018.1\| phosphatidylglycerophosphatase A [Photobacterium profundum SS9], gi\|469...	194.0	[0..8]	[161..3]
gi\|86147431, gi\|... - gi\|86147431\|ref\|ZP_01065743.1\| phosphatidylglycerophosphatase A [Vibrio sp. MED222], gi\|85834724\|gb\|...	194.0	[0..8]	[163..3]
gi\|62126664, gi\|... - gi\|62179031\|ref\|YP_215448.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enterica s...	193.0	[0..6]	[161..8]
gi\|110613988, gi... - gi\|110804440\|ref\|YP_687960.1\| phosphatidylglycerophosphatase A [Shigella flexneri 5 str. 8401], gi\|1...	193.0	[0..6]	[161..5]
gi\|95108841, gi\|... - gi\|95108841\|emb\|CAK13537.1\| phosphatidylglycerophosphatase A [Pseudomonas entomophila L48], gi\|10477... gi\|95108841 - gi\|95108841\|emb\|CAK13537.1\| phosphatidylglycerophosphatase A [Pseudomonas entomophila L48]	192.0	[0..16]	[162..19]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLSQDQAL SRLSLKNPIH FLALGFGSGL AAKAPGTFGT LAAIPVYLLL AQLPLAWYLA  60
   61 ATLVCVIAGI YICDKAANDM GVHDHGAIVW DEVAGLLITM IAAPAGILWL AVGFALFRLF 120
  121 DILKPWPIRW LDAKVEGGFG IMIDDVLAGV FALICLQVIV VISQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	1rfzA
Description:	Structure of hypothetical protein APC35681 from Bacillus stearothermophilus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits