YRC Public Data Repository - Protein Structure Prediction

Protein:	RECX_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RECX_SHEON.

Description	E-value	Query Range	Subject Range
gi\|120598089, gi... - gi\|82740704\|ref\|ZP_00903440.1\| regulatory protein RecX [Shewanella sp. W3-18-1], gi\|82721924\|gb\|EAP5... gi\|77815261, gi\|... - gi\|77815261\|ref\|ZP_00814499.1\| Regulatory protein RecX [Shewanella putrefaciens CN-32], gi\|77809735\|...	115.0	[0..1]	[127..14]
gi\|113948665, gi... - gi\|160876374\|ref\|YP_001555690.1\| regulatory protein RecX [Shewanella baltica OS195], gi\|160861896\|gb...	107.0	[0..1]	[117..14]
gi\|68543403, gi\|... - gi\|68543403\|ref\|ZP_00583109.1\| Regulatory protein RecX [Shewanella baltica OS155], gi\|68518876\|gb\|EA...	105.0	[0..1]	[117..14]
gi\|82403638, gi\|... - gi\|82498374\|ref\|ZP_00883875.1\| regulatory protein RecX [Shewanella sp. MR-4], gi\|82403638\|gb\|EAP4435...	105.0	[0..1]	[127..1]
gi\|78691430, gi\|... - gi\|78691430\|ref\|ZP_00856047.1\| regulatory protein RecX [Shewanella sp. MR-7], gi\|78509178\|gb\|EAP2258...	103.0	[0..1]	[127..30]
gi\|117919576, gi... - gi\|78685829\|ref\|ZP_00850604.1\| regulatory protein RecX [Shewanella sp. ANA-3], gi\|78506514\|gb\|EAP200...	103.0	[0..1]	[127..1]
RECX_VIBVY - Regulatory protein RecX OS=Vibrio vulnificus (strain YJ016) GN=recX PE=3 SV=1	102.0	[0..2]	[118..48]
gi\|48732795, gi\|... - gi\|77457403\|ref\|YP_346908.1\| recombination regulator RecX [Pseudomonas fluorescens Pf0-1], gi\|773814...	102.0	[0..2]	[124..48]
gi\|165925720, gi... - gi\|165925720\|ref\|ZP_02221552.1\| regulatory protein RecX [Yersinia pestis biovar Orientalis str. F199... gi\|22124792, gi\|... - gi\|22124792\|ref\|NP_668215.1\| recombination regulator RecX [Yersinia pestis KIM], gi\|21957616\|gb\|AAM8... RECX_YERPN - Regulatory protein RecX OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=recX PE=3 SV=1 gi\|166010039, gi... - gi\|166010039\|ref\|ZP_02230937.1\| regulatory protein RecX [Yersinia pestis biovar Antiqua str. E197900... RECX_YERPE - Regulatory protein RecX OS=Yersinia pestis GN=recX PE=3 SV=2 gi\|166213112, gi... - gi\|166213112\|ref\|ZP_02239147.1\| regulatory protein RecX [Yersinia pestis biovar Antiqua str. B420030... gi\|218930327, gi... - gi\|218930327\|ref\|YP_002348202.1\| recombination regulator RecX [Yersinia pestis CO92], gi\|16123459\|re... gi\|167051799, gi... - gi\|167399295\|ref\|ZP_02304819.1\| regulatory protein RecX [Yersinia pestis biovar Antiqua str. UG05-04... gi\|45435093, gi\|... - gi\|45440237\|ref\|NP_991776.1\| recombination regulator RecX [Yersinia pestis biovar Microtus str. 9100... gi\|167421553, gi... - gi\|167421553\|ref\|ZP_02313306.1\| regulatory protein RecX [Yersinia pestis biovar Orientalis str. MG05... gi\|229838926, gi... - gi\|229838926\|ref\|ZP_04459085.1\| inhibitor of RecA [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|229896407, gi... - gi\|229896407\|ref\|ZP_04511575.1\| inhibitor of RecA [Yersinia pestis Pestoides A], gi\|229700481\|gb\|EEO... gi\|229899493, gi... - gi\|229899493\|ref\|ZP_04514634.1\| inhibitor of RecA [Yersinia pestis biovar Orientalis str. India 195]... gi\|167057849, gi... - gi\|167423679\|ref\|ZP_02315432.1\| regulatory protein RecX [Yersinia pestis biovar Mediaevalis str. K19... gi\|167467647 - gi\|167467647\|ref\|ZP_02332351.1\| recombination regulator RecX [Yersinia pestis FV-1] gi\|89105926, gi\|... - gi\|89105926\|ref\|ZP_01178438.1\| COG2137: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|149289284, gi... - gi\|153997647\|ref\|ZP_02022747.1\| inhibitor of RecA [Yersinia pestis CA88-4125], gi\|149289284\|gb\|EDM39... gi\|170025589, gi... - gi\|170025589\|ref\|YP_001722094.1\| recombination regulator RecX [Yersinia pseudotuberculosis YPIII], g... RECX_YERPA - Regulatory protein RecX OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=recX PE=3 SV=1 RECX_YERPP - Regulatory protein RecX OS=Yersinia pestis (strain Pestoides F) GN=recX PE=3 SV=1	102.0	[0..1]	[116..80]
RECX_YERPS - Regulatory protein RecX OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=recX PE=3 SV=1 RECX_YERP3 - Regulatory protein RecX OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=recX PE=3 ... RECX_YERPS - Regulatory protein recX OS=Yersinia pseudotuberculosis GN=recX PE=3 SV=1 gi\|186697215, gi... - gi\|186894189\|ref\|YP_001871301.1\| recombination regulator RecX [Yersinia pseudotuberculosis PB1/+], g...	101.0	[0..1]	[116..75]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDDCEASGF INDKRYAELL VRSNIARGHG PIRIRQAIAQ KGLTKDCIEA ALIATDYDWF  60
   61 ELAKAKAKAK AIKKYGVPKV TEVKGSQSRE LIAKEKAKRV RFLLSQGFSY EQVIYALDYD 120
  121 PLEDNDD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits