YRC Public Data Repository - Protein Structure Prediction

Protein:	CSRA_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	65 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSRA_SHEON.

Description	E-value	Query Range	Subject Range
gi\|124509854, gi... - gi\|124546586\|ref\|ZP_01705653.1\| carbon storage regulator, CsrA [Shewanella putrefaciens 200], gi\|124... CSRA_SHESW - Carbon storage regulator homolog OS=Shewanella sp. (strain W3-18-1) GN=csrA PE=3 SV=1 CSRA_SHEPC - Carbon storage regulator homolog OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=csrA PE...	109.0	[0..1]	[65..1]
CSRA_SHEFN - Carbon storage regulator homolog OS=Shewanella frigidimarina (strain NCIMB 400) GN=csrA PE=3 SV=1	107.0	[0..1]	[65..1]

Back

Predicted Domain #1

Region A:
Residues: [1-65]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLILTRRVGE TLMIGDEVTV TVLGVKGNQV RIGVNAPKEV SVHREEIYQR IQSEKSGTPS  60
   61 EGGNF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.154902
Match:	1y00A
Description:	Solution structure of the Carbon Storage Regulator protein CsrA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits