YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349557, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	345 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349557, gi|....

Description	E-value	Query Range	Subject Range
gi\|84696184, gi\|... - gi\|84710959\|ref\|ZP_01019261.1\| Pilus retraction protein PilT [Polaromonas naphthalenivorans CJ2], gi...	304.0	[0..1]	[342..455]
gi\|94427957, gi\|... - gi\|94499756\|ref\|ZP_01306292.1\| Tfp pilus assembly protein, pilus retraction ATPase PilT [Oceanobacte...	302.0	[0..1]	[343..1]
gi\|68546018, gi\|... - gi\|68546018\|ref\|ZP_00585567.1\| Pilus retraction protein PilT [Shewanella amazonensis SB2B], gi\|68516...	299.0	[0..1]	[345..39]
gi\|68213800, gi\|... - gi\|91776459\|ref\|YP_546215.1\| twitching motility protein [Methylobacillus flagellatus KT], gi\|9171044...	298.0	[0..1]	[343..1]
gi\|207744252, gi... - gi\|207744252\|ref\|YP_002260644.1\| twitching mobility protein transport fimbria [Ralstonia solanacearu... gi\|207721651, gi... - gi\|207721651\|ref\|YP_002252090.1\| twitching mobility protein transport fimbria [Ralstonia solanacearu... gi\|83747263, gi\|... - gi\|83747263\|ref\|ZP_00944305.1\| PilT [Ralstonia solanacearum UW551], gi\|83726087\|gb\|EAP73223.1\| PilT ...	298.0	[0..1]	[343..1]
gi\|17429704 - gi\|17429704\|emb\|CAD16389.1\| probable twitching mobility protein transport fimbria [Ralstonia solanac... gi\|17547401 - gi\|17547401\|ref\|NP_520803.1\| twitching motility protein [Ralstonia solanacearum GMI1000]	297.0	[0..1]	[343..1]
gi\|78360111, gi\|... - gi\|78367851\|ref\|ZP_00838112.1\| Pilus retraction protein PilT [Shewanella sp. PV-4], gi\|78360111\|gb\|E...	297.0	[0..1]	[345..35]
gi\|69163050, gi\|... - gi\|69954211\|ref\|ZP_00640960.1\| Pilus retraction protein PilT [Shewanella frigidimarina NCIMB 400], g...	294.0	[0..1]	[345..1]
gi\|146293780, gi... - gi\|77814840\|ref\|ZP_00814092.1\| Pilus retraction protein PilT [Shewanella putrefaciens CN-32], gi\|778... gi\|120598148, gi... - gi\|82741394\|ref\|ZP_00904116.1\| Pilus retraction protein PilT [Shewanella sp. W3-18-1], gi\|82721231\|g... gi\|124547079, gi... - gi\|124547079\|ref\|ZP_01706038.1\| twitching motility protein [Shewanella putrefaciens 200], gi\|1245095...	293.0	[0..1]	[345..1]
gi\|71147458, gi\|... - gi\|71281718\|ref\|YP_270330.1\| twitching motility protein PilT [Colwellia psychrerythraea 34H], gi\|711...	292.0	[0..1]	[343..1]

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Predicted Domain #1

Region A:
Residues: [1-345]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEITELLAFS VKHKASDLHL SAGISPMIRV DGEVRKINLP ALDHQGVHSL VYDIMNDKQR  60
   61 KDFEEHLEID FSFEVPNLAR FRVNAFNQSR GAAAVFRTIP SDILSLEQLG APEIFKKISS 120
  121 FPRGLVLVTG PTGSGKSTTL AAMVDYINEN RHDHILTIED PIEFVHQNKQ CLINQREVHR 180
  181 HTHSFNAALR SALREDPDVI LVGEMRDLET IRLAMTAAET GHLVFGTLHT TSAAKTIDRV 240
  241 VDVFPAGEKD MVRTMLSESL QAVISQTLIK KIGGGRVAAH EIMMGTPAIR NLIREDKVAQ 300
  301 MYSAIQTGMA HGMQTLEQCL QNLVNRGLIT REDAMAKSSN KQATF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.522879
Match:	2gszA
Description:	No description for 2gszA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits