YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374861, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	370 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374861, gi|....

Description	E-value	Query Range	Subject Range
gi\|84696184, gi\|... - gi\|84710959\|ref\|ZP_01019261.1\| Pilus retraction protein PilT [Polaromonas naphthalenivorans CJ2], gi...	311.0	[0..1]	[345..455]
gi\|207744252, gi... - gi\|207744252\|ref\|YP_002260644.1\| twitching mobility protein transport fimbria [Ralstonia solanacearu... gi\|207721651, gi... - gi\|207721651\|ref\|YP_002252090.1\| twitching mobility protein transport fimbria [Ralstonia solanacearu... gi\|83747263, gi\|... - gi\|83747263\|ref\|ZP_00944305.1\| PilT [Ralstonia solanacearum UW551], gi\|83726087\|gb\|EAP73223.1\| PilT ...	303.0	[0..1]	[346..1]
gi\|17429704 - gi\|17429704\|emb\|CAD16389.1\| probable twitching mobility protein transport fimbria [Ralstonia solanac... gi\|17547401 - gi\|17547401\|ref\|NP_520803.1\| twitching motility protein [Ralstonia solanacearum GMI1000]	303.0	[0..1]	[346..1]
gi\|68213800, gi\|... - gi\|91776459\|ref\|YP_546215.1\| twitching motility protein [Methylobacillus flagellatus KT], gi\|9171044...	302.0	[0..1]	[345..1]
gi\|94427957, gi\|... - gi\|94499756\|ref\|ZP_01306292.1\| Tfp pilus assembly protein, pilus retraction ATPase PilT [Oceanobacte...	300.0	[0..1]	[345..1]
gi\|75906600, gi\|... - gi\|75906600\|ref\|YP_320896.1\| pilus retraction protein PilT [Anabaena variabilis ATCC 29413], gi\|7570...	299.0	[0..1]	[349..3]
gi\|78688422, gi\|... - gi\|78688422\|ref\|ZP_00853112.1\| Pilus retraction protein PilT [Shewanella sp. ANA-3], gi\|78503840\|gb\|...	299.0	[0..1]	[370..1]
gi\|74318437, gi\|... - gi\|74318437\|ref\|YP_316177.1\| pilus retraction ATPase PilT [Thiobacillus denitrificans ATCC 25259], g...	299.0	[0..1]	[347..1]
gi\|17131535, gi\|... - gi\|17229935\|ref\|NP_486483.1\| twitching motility protein [Nostoc sp. PCC 7120], gi\|17131535\|dbj\|BAB74... gi\|25316026 - pir\|\|AD2111 twitching motility protein [imported] - Nostoc sp. (strain PCC 7120)	299.0	[0..1]	[349..3]
gi\|78508546, gi\|... - gi\|78692056\|ref\|ZP_00856632.1\| Pilus retraction protein PilT [Shewanella sp. MR-7], gi\|78508546\|gb\|E... gi\|82404393, gi\|... - gi\|82497567\|ref\|ZP_00883099.1\| Pilus retraction protein PilT [Shewanella sp. MR-4], gi\|82404393\|gb\|E...	299.0	[0..1]	[370..1]

Back

Predicted Domain #1

Region A:
Residues: [1-370]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVRPFLKVM VERKASDLFI TAGFPPSAKI DGELRPLAES IFTPAQSLDF VESVMTEAQK  60
   61 KEFHTTRECN FAFAVKELGR FRVSAFWQRE SPGCVMRRIE TKIPEVDDLK LPPILKDLVM 120
  121 SKRGLIIMVG GTGTGKSTSL AALVGYRNSH ARGHILTIED PVEFVHDHRK SIITQREVGI 180
  181 DTESFDAALK SSLRQAPDVI LIGEIRTQET MEFALSFAET GHLCMATLHA NNANQALDRI 240
  241 MHLVPESKHQ QLLFDLSLNL RGIVAQQLVP KVDGTGRRAA IEVLINTPRV ASLIAKNELH 300
  301 LLKETMAKSN EQGMQTFDQA LLQLYVDGEI SYADALHHAD SPNDLRLMIK LQNKEPPSSS 360
  361 FMEGVTLDMD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.045757
Match:	2ewvA
Description:	No description for 2ewvA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits