YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374860, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	177 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374860, gi|....

Description	E-value	Query Range	Subject Range
gi\|67931957, gi\|... - gi\|67931957\|ref\|ZP_00525110.1\| Glutathione peroxidase [Solibacter usitatus Ellin6076], gi\|67860827\|g...	155.0	[0..1]	[177..1]
gi\|78508547, gi\|... - gi\|78692057\|ref\|ZP_00856633.1\| glutathione peroxidase, putative [Shewanella sp. MR-7], gi\|78508547\|g...	155.0	[0..1]	[177..27]
gi\|117919646, gi... - gi\|78688423\|ref\|ZP_00853113.1\| glutathione peroxidase, putative [Shewanella sp. ANA-3], gi\|78503841\|...	155.0	[0..1]	[177..27]
gi\|56420320, gi\|... - gi\|56420320\|ref\|YP_147638.1\| glutathione peroxidase [Geobacillus kaustophilus HTA426], gi\|56380162\|d...	155.0	[0..24]	[177..2]
gi\|82404392, gi\|... - gi\|82497566\|ref\|ZP_00883098.1\| glutathione peroxidase, putative [Shewanella sp. MR-4], gi\|82404392\|g...	154.0	[0..1]	[177..27]
gi\|39575630, gi\|... - gi\|42523424\|ref\|NP_968804.1\| hypothetical protein Bd1947 [Bdellovibrio bacteriovorus HD100], gi\|3957...	153.0	[0..2]	[177..35]
gi\|21112574, gi\|... - gi\|21230956\|ref\|NP_636873.1\| ABC transporter vitamin B12 uptake permease [Xanthomonas campestris pv.... gi\|66574374, gi\|... - gi\|66769042\|ref\|YP_243804.1\| ABC transporter vitamin B12 uptake permease [Xanthomonas campestris pv....	153.0	[0..1]	[177..3]
gi\|254234409, gi... - gi\|254234409\|ref\|ZP_04927732.1\| hypothetical protein PACG_00258 [Pseudomonas aeruginosa C3719], gi\|1... gi\|11351328 - pir\|\|G83484 probable glutathione peroxidase PA1287 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|15596484, gi\|... - gi\|9947222\|gb\|AAG04676.1\|AE004558_5 probable glutathione peroxidase [Pseudomonas aeruginosa PAO1], g...	152.0	[0..1]	[177..1]
gi\|49081710 - gi\|49081710\|gb\|AAT50255.1\| PA1287 [synthetic construct]	152.0	[0..1]	[177..1]
gi\|107100738 - gi\|107100738\|ref\|ZP_01364656.1\| hypothetical protein PaerPA_01001766 [Pseudomonas aeruginosa PACS2] gi\|84321971 - gi\|84321971\|ref\|ZP_00970321.1\| COG0386: Glutathione peroxidase [Pseudomonas aeruginosa C3719]	152.0	[0..4]	[177..2]

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Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKFPLFILT SLMSTSVFAA TCPSYLDVEV RKLHSEQSVN LCELTQGKPV LLINTASNCG  60
   61 YTSQFKALEA LHKEYKDKGL VVIGFPSDDF FQEENDEKDT AKVCYINYGV TFTMLATSPV 120
  121 RGSDVNSVFK YLGDKAGAPK WNFYKYVVSG DGNTVMQFNS KVKPDSTELK QAIESVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.045757
Match:	2p5qA
Description:	No description for 2p5qA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits