YRC Public Data Repository - Protein Structure Prediction

Protein:	HEMH2_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	327 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HEMH2_SHEON.

Description	E-value	Query Range	Subject Range
gi\|78367849, gi\|... - gi\|78367849\|ref\|ZP_00838110.1\| Ferrochelatase [Shewanella sp. PV-4], gi\|78360109\|gb\|EAP01952.1\| Ferr...	454.0	[0..2]	[327..30]
gi\|91189570, gi\|... - gi\|91225920\|ref\|ZP_01260889.1\| ferrochelatase [Vibrio alginolyticus 12G01], gi\|91189570\|gb\|EAS75846....	449.0	[0..7]	[327..5]
HEMZ_VIBPA, HEMH... - (Q87RH3) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme synthetase), Ferrochelatase OS=V... HEMH_VIBPA - Ferrochelatase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=hemH PE=3 SV=1	447.0	[0..5]	[327..3]
gi\|116184515, gi... - gi\|75854980\|ref\|ZP_00762646.1\| COG0276: Protoheme ferro-lyase (ferrochelatase) [Vibrio sp. Ex25], gi...	447.0	[0..7]	[327..5]
HEMH_ALTMD - Ferrochelatase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=hemH PE=3 SV=1	445.0	[0..2]	[327..10]
HEMH_DECAR - Ferrochelatase OS=Dechloromonas aromatica (strain RCB) GN=hemH PE=3 SV=1	444.0	[0..3]	[327..12]
gi\|77814837, gi\|... - gi\|77814837\|ref\|ZP_00814089.1\| Ferrochelatase [Shewanella putrefaciens CN-32], gi\|77810129\|gb\|EAO945...	443.0	[0..1]	[327..11]
HEMH_RALSO - Ferrochelatase OS=Ralstonia solanacearum (strain GMI1000) GN=hemH PE=3 SV=1 HEMH_RALSO, HEMZ... - (Q8XW32) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme synthetase), Ferrochelatase OS=R...	442.0	[0..2]	[327..10]
gi\|90416219, gi\|... - gi\|90416219\|ref\|ZP_01224151.1\| Protoheme ferro-lyase [marine gamma proteobacterium HTCC2207], gi\|903... gi\|90416219\|ref\|... - Protoheme ferro-lyase [marine gamma proteobacterium HTCC2207]	442.0	[0..7]	[327..16]
gi\|83747227, gi\|... - gi\|83747227\|ref\|ZP_00944269.1\| Ferrochelatase [Ralstonia solanacearum UW551], gi\|83726051\|gb\|EAP7318... gi\|206595617, gi... - gi\|207744212\|ref\|YP_002260604.1\| ferrochelatase (protoheme ferro-lyase) (hemesynthetase) protein [Ra... gi\|206586850, gi... - gi\|207721688\|ref\|YP_002252127.1\| ferrochelatase (protoheme ferro-lyase) (hemesynthetase) protein [Ra...	442.0	[0..2]	[327..10]

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Predicted Domain #1

Region A:
Residues: [1-327]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHAARGKVG VLLLNLGTPD APTASAVRRY LAEFLSDPRV VEIPKLLWML ILYGIVLRVR  60
   61 PAKSAALYQK VWTEAGSPLM DISLRQTAKL SDKLTADGHQ VSVHLAMRYG NPSVASTLRE 120
  121 MHKQGIDKLV VLPLYPQYAA PTTGSAFDAI AKELSQWRYL PSLHFINTYH DNPDFIAALV 180
  181 NSIRDDFDKH GKPQKLVLSY HGMPERNLHL GDPYYCFCMK TTRLVAEQLG LSKDEFAITF 240
  241 QSRFGKAKWL QPYTDATMAA LPSQGVRDVA IVCPAFSADC LETLEEIVGE NGHIFTHAGG 300
  301 EKFRYIPALN DNDDHIAMMA NLVKPYL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	111.0
Match:	2po7A
Description:	No description for 2po7A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits