YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374852, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374852, gi|....

Description	E-value	Query Range	Subject Range
gi\|220952108 - gi\|220952108\|gb\|ACL88597.1\| Prx5037-PA [synthetic construct] Prx5037-PA - The gene Peroxiredoxin 5037 is referred to in FlyBase by the symbol Dmel\Prx5037 (CG5826, FBgn003851...	174.0	[0..5]	[197..1]
gi\|33865747, gi\|... - gi\|33865747\|ref\|NP_897306.1\| thioredoxin peroxidase [Synechococcus sp. WH 8102], gi\|33632917\|emb\|CAE...	168.0	[0..45]	[197..7]
gi\|84512778, gi\|... - gi\|84518029\|ref\|ZP_01005378.1\| thioredoxin peroxidase [Prochlorococcus marinus str. MIT 9211], gi\|84...	168.0	[0..45]	[197..6]
gi\|78184723, gi\|... - gi\|78184723\|ref\|YP_377158.1\| thioredoxin peroxidase [Synechococcus sp. CC9902], gi\|78169017\|gb\|ABB26...	167.0	[0..45]	[197..10]
gi\|116070595, gi... - gi\|116070595\|ref\|ZP_01467864.1\| thioredoxin peroxidase [Synechococcus sp. BL107], gi\|116066000\|gb\|EA...	167.0	[0..45]	[197..7]
gi\|51892064, gi\|... - gi\|51892064\|ref\|YP_074755.1\| 2-cys peroxiredoxin [Symbiobacterium thermophilum IAM 14863], gi\|518557...	167.0	[0..44]	[196..1]
gi\|125773251\|ref... - GA19159-PA [Drosophila pseudoobscura], GA19159 [Drosophila pseudoobscura pseudoobscura] gi\|125773251, gi... - gi\|54637618\|gb\|EAL27020.1\| GA19159 [Drosophila pseudoobscura pseudoobscura], gi\|125773251\|ref\|XP_001... gi\|195158357, gi... - gi\|195158357\|ref\|XP_002020058.1\| GL13701 [Drosophila persimilis], gi\|194116827\|gb\|EDW38870.1\| GL1370...	167.0	[0..5]	[197..1]
gi\|78197313, gi\|... - gi\|78212854\|ref\|YP_381633.1\| thioredoxin peroxidase [Synechococcus sp. CC9605], gi\|78197313\|gb\|ABB35...	166.0	[0..45]	[197..7]
gi\|67083335 - gi\|67083335\|gb\|AAY66603.1\| thioredoxin-dependent peroxide reductase [Ixodes scapularis]	165.0	[0..5]	[197..1]
gi\|33634943, gi\|... - gi\|33863026\|ref\|NP_894586.1\| thioredoxin peroxidase [Prochlorococcus marinus str. MIT 9313], gi\|3363...	165.0	[0..45]	[197..7]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKYVSFLAA GCVFSLMLLS PMAIANDKSQ VMMGEKTVTL EGKLPKLEQM APRFKVVDDK  60
   61 FNPINLTDFK GKTILISAVP SLDTGVCALQ TKRFNSEVGH FSDNVVMLTI STDLPFAQKR 120
  121 FCKVENVENI KVLSDSVWRD FGEKYGLLIE DYGLLARAIF IIDAEGKLKY QELVPNITEH 180
  181 PNYDAALEAL KTIQAQQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.69897
Match:	1psqA
Description:	Probable thiol peroxidase PsaD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
antioxidant activity	3.8464796631544	bayes_pls_golite062009
peroxidase activity	3.44705858438242	bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor	3.44705858438242	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	2.23310780102446	bayes_pls_golite062009
peroxiredoxin activity	2.12777217096121	bayes_pls_golite062009
glutathione peroxidase activity	2.012364779649	bayes_pls_golite062009
thioredoxin peroxidase activity	1.96134566495756	bayes_pls_golite062009
selenium binding	1.66775674348908	bayes_pls_golite062009
protein disulfide oxidoreductase activity	1.47769936616412	bayes_pls_golite062009
disulfide oxidoreductase activity	1.32811008894503	bayes_pls_golite062009
binding	0.828696005067827	bayes_pls_golite062009
catalytic activity	0.672192331361968	bayes_pls_golite062009
protein binding	0.134341907247724	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	0.0801269279614203	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: