YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374804, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	488 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374804, gi|....

Description	E-value	Query Range	Subject Range
gi\|112822609, gi... - gi\|113460566\|ref\|YP_718630.1\| inositol-5-monophosphate dehydrogenase [Haemophilus somnus 129PT], gi\|...	421.0	[0..1]	[487..1]
gi\|168827042, gi... - gi\|53728499\|ref\|ZP_00132545.2\| COG0516: IMP dehydrogenase/GMP reductase [Haemophilus somnus 2336], g...	420.0	[0..1]	[487..1]
IMDH_PASMU - Inosine-5'-monophosphate dehydrogenase OS=Pasteurella multocida GN=guaB PE=3 SV=1 IMDH_PASMU - Inosine-5'-monophosphate dehydrogenase OS=Pasteurella multocida (strain Pm70) GN=guaB PE=3 SV=1	418.0	[0..1]	[487..1]
gi\|27363887, gi\|... - gi\|27363887\|ref\|NP_759415.1\| inositol-5-monophosphate dehydrogenase [Vibrio vulnificus CMCP6], gi\|27...	418.0	[0..1]	[487..1]
gi\|124509589, gi... - gi\|124547115\|ref\|ZP_01706074.1\| inosine-5'-monophosphate dehydrogenase [Shewanella putrefaciens 200]... gi\|82719478, gi\|... - gi\|82743167\|ref\|ZP_00905829.1\| IMP dehydrogenase [Shewanella sp. W3-18-1], gi\|82719478\|gb\|EAP54382.1... gi\|77809325, gi\|... - gi\|77815677\|ref\|ZP_00814901.1\| IMP dehydrogenase [Shewanella putrefaciens CN-32], gi\|77809325\|gb\|EAO...	417.0	[0..1]	[488..1]
gi\|82406695, gi\|... - gi\|82495192\|ref\|ZP_00880769.1\| IMP dehydrogenase [Shewanella sp. MR-4], gi\|82406695\|gb\|EAP47358.1\| I...	417.0	[0..1]	[488..1]
gi\|78686227, gi\|... - gi\|78686227\|ref\|ZP_00850997.1\| IMP dehydrogenase [Shewanella sp. ANA-3], gi\|78506019\|gb\|EAP19542.1\| ...	417.0	[0..1]	[488..1]
gi\|37197701, gi\|... - gi\|37678959\|ref\|NP_933568.1\| inositol-5-monophosphate dehydrogenase [Vibrio vulnificus YJ016], gi\|37...	417.0	[0..1]	[487..3]
gi\|78511020, gi\|... - gi\|78689593\|ref\|ZP_00854253.1\| IMP dehydrogenase [Shewanella sp. MR-7], gi\|78511020\|gb\|EAP24382.1\| I...	416.0	[0..1]	[488..1]
gi\|119775493, gi... - gi\|68545906\|ref\|ZP_00585455.1\| IMP dehydrogenase [Shewanella amazonensis SB2B], gi\|68516266\|gb\|EAN39...	415.0	[0..1]	[487..1]

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Predicted Domain #1

Region A:
Residues: [1-488]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRLIKEALT FDDVLLVPAH STVLPNTAIL KTRLTNTIEL NIPLVSAAMD TVTEARLAIA  60
   61 MAQEGGLGFI HKNMSIEKQA EEVRKVKIYE AGVVQQPVTV TPSTTLADLK VLTAKNGFAG 120
  121 YPVVNDANEL IGIITGRDVR FVTDWSKTVE EVMTPKARLV TVAEGTKLDE VQKLMHSHRI 180
  181 EKVLVVDDNF KLKGLITVKD FEKAERKPNA CKDELGRLRV GAAVGAGAGN EERVDALVKA 240
  241 GVDVLLIDSS HGHSEGVLQR IRETRAKHPD LQIIGGNVAT AEGALALVEA GVNAVKVGIG 300
  301 PGSICTTRIV TGVGVPQITA VSDAAEAVKG LGIPVIADGG VRFSGDLAKA LAAGASCIMA 360
  361 GSMFAGTDEA PGETELYQGR AYKSYRGMGS LGAMSQGSSD RYFQSDNAAD KLVPEGIEGR 420
  421 VPYKGKLKEI IHQHMGGLRS CMGLTGCATI QELNEKAQFV KVTSAGMGES HVHDVTITKE 480
  481 APNYRSGS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	113.0
Match:	1vrdA
Description:	Crystal structure of Inosine-5'-monophosphate dehydrogenase (TM1347) from THERMOTOGA MARITIMA at 2.18 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits