YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349471, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	518 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349471, gi|....

Description	E-value	Query Range	Subject Range
gi\|15641846, gi\|... - gi\|9656372\|gb\|AAF94992.1\| cytochrome d ubiquinol oxidase, subunit I [Vibrio cholerae O1 biovar El To... gi\|229370275, gi... - gi\|229607620\|ref\|YP_002878268.1\| cytochrome d ubiquinol oxidase subunit I [Vibrio cholerae MJ-1236],... gi\|229518841, gi... - gi\|229518841\|ref\|ZP_04408284.1\| cytochrome d ubiquinol oxidase subunit I [Vibrio cholerae RC9], gi\|2... gi\|229351667, gi... - gi\|229511702\|ref\|ZP_04401181.1\| cytochrome d ubiquinol oxidase subunit I [Vibrio cholerae B33], gi\|2... gi\|121591341, gi... - gi\|121591341\|ref\|ZP_01678629.1\| cytochrome d ubiquinol oxidase, subunit I [Vibrio cholerae 2740-80],... gi\|229508059, gi... - gi\|229508059\|ref\|ZP_04397564.1\| cytochrome d ubiquinol oxidase subunit I [Vibrio cholerae BX 330286]... gi\|75830159, gi\|... - gi\|75830159\|ref\|ZP_00759442.1\| COG1271: Cytochrome bd-type quinol oxidase, subunit 1 [Vibrio cholera... gi\|153225631, gi... - gi\|153225631\|ref\|ZP_01954817.1\| cytochrome d ubiquinol oxidase, subunit I [Vibrio cholerae MAK 757],... gi\|227081973, gi... - gi\|227081973\|ref\|YP_002810524.1\| cytochrome d ubiquinol oxidase, subunit I [Vibrio cholerae M66-2], ... gi\|75827169, gi\|... - gi\|75827169\|ref\|ZP_00756604.1\| COG1271: Cytochrome bd-type quinol oxidase, subunit 1 [Vibrio cholera... gi\|75814782, gi\|... - gi\|75814782\|ref\|ZP_00745333.1\| COG1271: Cytochrome bd-type quinol oxidase, subunit 1 [Vibrio cholera... gi\|11280222 - pir\|\|E82149 cytochrome d ubiquinol oxidase, chain I VC1844 [similarity] - Vibrio cholerae (strain N1...	660.0	[0..3]	[516..14]
gi\|91188505, gi\|... - gi\|91227612\|ref\|ZP_01261916.1\| cytochrome d ubiquinol oxidase, subunit I [Vibrio alginolyticus 12G01...	657.0	[0..3]	[516..1]
gi\|75853720, gi\|... - gi\|75853720\|ref\|ZP_00761496.1\| COG1271: Cytochrome bd-type quinol oxidase, subunit 1 [Vibrio sp. Ex2...	657.0	[0..3]	[516..1]
gi\|28806040, gi\|... - gi\|28897827\|ref\|NP_797432.1\| cytochrome d ubiquinol oxidase, subunit I [Vibrio parahaemolyticus RIMD... gi\|28806040 - gi\|28806040\|dbj\|BAC59316.1\| cytochrome d ubiquinol oxidase, subunit I [Vibrio parahaemolyticus RIMD ...	657.0	[0..3]	[516..11]
gi\|27361640, gi\|... - gi\|27365492\|ref\|NP_761020.1\| cytochrome d ubiquinol oxidase, subunit I [Vibrio vulnificus CMCP6], gi...	654.0	[0..3]	[516..1]
gi\|37199215, gi\|... - gi\|37680467\|ref\|NP_935076.1\| cytochrome d ubiquinol oxidase, subunit I [Vibrio vulnificus YJ016], gi...	654.0	[0..3]	[516..11]
gi\|85835748, gi\|... - gi\|86146485\|ref\|ZP_01064808.1\| Cytochrome d ubiquinol oxidase, subunit I [Vibrio sp. MED222], gi\|858...	652.0	[0..3]	[517..1]
gi\|26107100, gi\|... - gi\|26246701\|ref\|NP_752741.1\| cytochrome D ubiquinol oxidase subunit I [Escherichia coli CFT073], gi\|... gi\|24111991, gi\|... - gi\|24111991\|ref\|NP_706501.1\| cytochrome d terminal oxidase, polypeptide subunit I [Shigella flexneri... gi\|1786953, gi\|1... - gb\|AAC73827.1\| cytochrome d terminal oxidase, polypeptide subunit I [Escherichia coli K12], gi\|1612... gi\|13360227, gi\|... - gi\|15830022\|ref\|NP_308795.1\| cytochrome d terminal oxidase polypeptide subunit I [Escherichia coli O... gi\|15800449, gi\|... - gi\|15800449\|ref\|NP_286461.1\| cytochrome d terminal oxidase, polypeptide subunit I [Escherichia coli ... gi\|75234488 - gi\|75234488\|ref\|ZP_00718835.1\| COG1271: Cytochrome bd-type quinol oxidase, subunit 1 [Escherichia co... gi\|74311257, gi\|... - gi\|74311257\|ref\|YP_309676.1\| cytochrome d terminal oxidase polypeptide subunit I [Shigella sonnei Ss... gi\|75229635 - gi\|75229635\|ref\|ZP_00716172.1\| COG1271: Cytochrome bd-type quinol oxidase, subunit 1 [Escherichia co... gi\|75237351 - gi\|75237351\|ref\|ZP_00721393.1\| COG1271: Cytochrome bd-type quinol oxidase, subunit 1 [Escherichia co... gi\|82543160, gi\|... - gi\|82543160\|ref\|YP_407107.1\| cytochrome d terminal oxidase, polypeptide subunit I [Shigella boydii S... gi\|83585336 - gi\|83585336\|ref\|ZP_00923983.1\| COG1271: Cytochrome bd-type quinol oxidase, subunit 1 [Escherichia co... gi\|75209698 - gi\|75209698\|ref\|ZP_00709906.1\| COG1271: Cytochrome bd-type quinol oxidase, subunit 1 [Escherichia co... gi\|91209765, gi\|... - gi\|91209765\|ref\|YP_539751.1\| cytochrome d terminal oxidase, polypeptide subunit I [Escherichia coli ... gi\|13360227, gi\|... - gi\|15830022\|ref\|NP_308795.1\| cytochrome d terminal oxidase polypeptide subunit I [Escherichia coli O... gi\|227838722, gi... - gi\|227884301\|ref\|ZP_04002106.1\| cytochrome d terminal oxidase, polypeptide subunit I [Escherichia co... gi\|117622924, gi... - gi\|117622924\|ref\|YP_851837.1\| cytochrome d terminal oxidase, subunit I [Escherichia coli APEC O1], g... gi\|226898515, gi... - gi\|237707305\|ref\|ZP_04537786.1\| cytochrome d terminal oxidase polypeptide subunit I [Escherichia sp.... gi\|25327317, gi\|... - pir\|\|D64809 cytochrome d ubiquinol oxidase (EC 1.10.3.-) chain I - Escherichia coli (strain K-12), p...	652.0	[0..2]	[517..1]
gi\|30062104, gi\|... - gi\|30062104\|ref\|NP_836275.1\| cytochrome d terminal oxidase, polypeptide subunit I [Shigella flexneri...	651.0	[0..2]	[517..1]
gi\|197317797, gi... - gi\|197336307\|ref\|YP_002155716.1\| cytochrome D ubiquinol oxidase subunit 1 [Vibrio fischeri MJ11], gi... gi\|59479661, gi\|... - gi\|59711560\|ref\|YP_204336.1\| cytochrome d terminal oxidase, subunit I [Vibrio fischeri ES114], gi\|59...	651.0	[0..2]	[516..1]

Back

Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVEEVVELS RLQFALTAMY HFLFVPLTLG LAFLLAIMVS LYVMTDKHIY KDMTKFWGKL  60
   61 FGINFALGVS TGLAME

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [77-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FQFGTNWSYY SHYVGDIFGA PLAIEGLMAF FLESTLVGMF FFGWDRFSKR QHLAVTWLVA  60
   61 LGSNLSALWI LVANGWMQNP VGSVFNYETM RMEMTSFAEV VFNPVAQVKF VHTVASGYVT 120
  121 GAMFVLAISS YYILKKRDLP FARRSFAIAA SFGMAAILSV IVLGDESGYK VGEAQRVKLA 180
  181 AIEAE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [262-455]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WHTEPAPAAF TAVGFPNQET METDFAVKIP YAMGIVATRS LDEQVTGIHD LISEHEVRIR  60
   61 NGMKAYAMLV KLRAGDTSPE LRAEFEAAKV DLGYGLLLKR YTNNVVDATE EQIKAAAKDS 120
  121 IPNVAPMFWS FRVMVGLGFV MLFVFAAAFW QSTRHQIEEN KWVLKAALFS LPLPWIAIEC 180
  181 GWFVAEYGRQ PWTI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [456-518]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEVLPTFMSA SSLTTGDLWF SIISISLFYT VLLVIEIFLM LKFARLGPSS LKTGRYHFEK  60
   61 LEA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits