YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349431, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349431, gi|....

Description	E-value	Query Range	Subject Range
gi\|24986119, gi\|... - gi\|26991084\|ref\|NP_746509.1\| anti-sigma-28 factor, FlgM [Pseudomonas putida KT2440], gi\|24986119\|gb\|... tr\|E4RB04\|E4RB04... - FlgM OS=Pseudomonas putida (strain BIRD-1) GN=flgM PE=4 SV=1 tr\|I7C3B2\|I7C3B2... - Anti-sigma-28 factor, FlgM OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_5093 PE=4 SV=1 gi\|82737705, gi\|... - gi\|82737705\|ref\|ZP_00900551.1\| negative regulator of flagellin synthesis FlgM [Pseudomonas putida F1...	92.0	[0..1]	[101..1]
gi\|70731830, gi\|... - gi\|70731830\|ref\|YP_261572.1\| negative regulator of flagellin synthesis FlgM, putative [Pseudomonas f...	89.0	[0..1]	[101..1]
gi\|85836109, gi\|... - gi\|86146162\|ref\|ZP_01064488.1\| polar flagellar FlgM [Vibrio sp. MED222], gi\|85836109\|gb\|EAQ54241.1\| ...	86.0	[0..5]	[105..21]
gi\|95111838 - gi\|95111838\|emb\|CAK16562.1\| negative regulator of flagellin synthesis FlgM [Pseudomonas entomophila ... gi\|104782851, gi... - gi\|95111838\|emb\|CAK16562.1\| negative regulator of flagellin synthesis FlgM [Pseudomonas entomophila ...	86.0	[0..1]	[101..1]
gi\|66046717, gi\|... - gi\|66046717\|ref\|YP_236558.1\| anti-sigma-28 factor, FlgM [Pseudomonas syringae pv. syringae B728a], g...	86.0	[0..1]	[101..1]
gi\|116051366, gi... - gi\|32038451\|ref\|ZP_00136723.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact...	86.0	[0..1]	[101..1]
gi\|254236313, gi... - gi\|84319934\|ref\|ZP_00968321.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact... gi\|126195416, gi... - gi\|84326004\|ref\|ZP_00974035.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact... gi\|218770676, gi... - gi\|218890453\|ref\|YP_002439317.1\| FlgM [Pseudomonas aeruginosa LESB58], gi\|218770676\|emb\|CAW26441.1\| ... gi\|107102883 - gi\|107102883\|ref\|ZP_01366801.1\| hypothetical protein PaerPA_01003951 [Pseudomonas aeruginosa PACS2] gi\|11349881, gi\|... - gi\|14581461\|gb\|AAK31636.1\| FlgM [Pseudomonas aeruginosa], pir\|\|D83227 hypothetical protein PA3351 [i... gi\|15598547, gi\|... - gi\|9949484\|gb\|AAG06739.1\|AE004757_8 FlgM [Pseudomonas aeruginosa PAO1], gi\|15598547\|ref\|NP_252041.1\|...	85.0	[0..1]	[101..1]
gi\|48730656, gi\|... - gi\|77460476\|ref\|YP_349983.1\| anti-sigma-28 factor, FlgM [Pseudomonas fluorescens Pf0-1], gi\|77384479...	84.0	[0..1]	[101..1]
gi\|49089088 - gi\|49089088\|gb\|AAT51640.1\| PA3351 [synthetic construct]	84.0	[0..1]	[101..1]
gi\|152984507, gi... - gi\|94413583\|ref\|ZP_01293462.1\| hypothetical protein PaerP_01004599 [Pseudomonas aeruginosa PA7], gi\|...	84.0	[0..1]	[101..1]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIDISKFNA GTAAQVRSNS TKQSSESEQS SQVAAKSTQQ KGDSFVITAQ AQQLQGAHTK  60
   61 MASLPEVDQK KVAEIKQAIA EGRYKIDPEK LAANIANFEA ELNELN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.36
Match:	1rp3B
Description:	Cocrystal structure of the flagellar sigma/anti-sigma complex, Sigma-28/FlgM
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits