YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374758, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	453 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374758, gi|....

Description	E-value	Query Range	Subject Range
gi\|124509965, gi... - gi\|124546476\|ref\|ZP_01705552.1\| flagellar basal body FlaE [Shewanella putrefaciens 200], gi\|12450996... gi\|145565380, gi... - gi\|77814156\|ref\|ZP_00813422.1\| Flagellar basal body rod protein:Protein of unknown function DUF1078:...	257.0	[0..1]	[453..1]
gi\|127512279, gi... - gi\|78366420\|ref\|ZP_00836700.1\| Flagellar basal body rod protein:Protein of unknown function DUF1078:...	257.0	[0..1]	[453..1]
gi\|78686554, gi\|... - gi\|78686554\|ref\|ZP_00851320.1\| flagellar hook protein FlgE [Shewanella sp. ANA-3], gi\|78505718\|gb\|EA...	256.0	[0..1]	[453..1]
gi\|82720822, gi\|... - gi\|82741806\|ref\|ZP_00904518.1\| flagellar hook protein FlgE [Shewanella sp. W3-18-1], gi\|82720822\|gb\|...	254.0	[0..1]	[453..1]
gi\|113888280, gi... - gi\|78689567\|ref\|ZP_00854227.1\| flagellar hook protein FlgE [Shewanella sp. MR-7], gi\|78510994\|gb\|EAP...	253.0	[0..1]	[453..1]
gi\|82495219, gi\|... - gi\|82495219\|ref\|ZP_00880796.1\| flagellar hook protein FlgE [Shewanella sp. MR-4], gi\|82406722\|gb\|EAP...	252.0	[0..1]	[453..1]
gi\|126175146, gi... - gi\|68541507\|ref\|ZP_00581250.1\| Flagellar basal body rod protein:Protein of unknown function DUF1078:...	252.0	[0..1]	[453..1]
gi\|217497733, gi... - gi\|217972598\|ref\|YP_002357349.1\| flagellar hook protein FlgE [Shewanella baltica OS223], gi\|21749773... gi\|153001472, gi... - gi\|153001472\|ref\|YP_001367153.1\| flagellar hook protein FlgE [Shewanella baltica OS185], gi\|15136609... gi\|160876203, gi... - gi\|160876203\|ref\|YP_001555519.1\| flagellar hook protein FlgE [Shewanella baltica OS195], gi\|16086172...	250.0	[0..1]	[453..1]
gi\|68545867, gi\|... - gi\|68545867\|ref\|ZP_00585416.1\| Flagellar basal body rod protein:Protein of unknown function DUF1078:...	248.0	[0..1]	[453..1]
gi\|91792664, gi\|... - gi\|91792664\|ref\|YP_562315.1\| flagellar hook protein FlgE [Shewanella denitrificans OS217], gi\|917146...	241.0	[0..1]	[453..1]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFNIALSGI SAAQKDLNTT ANNIANANTI GFKESRAEFA DVYANSIFSN SKTAVGGGVA  60
   61 TSQVAQQFHQ GSLQLT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [77-453]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNSLDLAIKG GGFFVTASEI GTLDHQFTRA GAFKVDKNNY MVDSAGNFLQ TFPVDKDGNS  60
   61 TSVSLTTAKP VQIPDTAGSP VQTENVTLQM NLNAKEGSLD PAAFDPLDSK TYNSVTSMTI 120
  121 YDSLGEPHIM TTYFVKPNNG SYNGENNWVA YYAIDGKQVD VSGPAGTYQT DTNGDGTPDA 180
  181 TGTAQTTGGW KGSVLKFNSV GVYTGSDPAV VTTEALGVGG AGVLGPGADG TQAVNIKFNA 240
  241 PTQYSAPFAA TELSQDGTTV GRLTNVEIGE DGLITASYSN GSTVPLARVA LVRFANEQGL 300
  301 TQVGNTSWKA SLSSGPALAG EPNSGTFGSL SSSALEQSNI DLTTELVDLI SAQRNFQANS 360
  361 RTLEVNNTLQ QTVLQIR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.30103
Match:	1wlgA
Description:	Crystal structure of FlgE31, a major fragment of the hook protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits