YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349419, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	262 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349419, gi|....

Description	E-value	Query Range	Subject Range
gi\|7443088 - pir\|\|C70372 flagellar hook basal body protein flgG - Aquifex aeolicus gi\|15606190, gi\|... - gi\|2983377\|gb\|AAC06963.1\| flagellar hook basal-body protein FlgG [Aquifex aeolicus VF5], gi\|15606190...	247.0	[0..1]	[261..1]
gi\|4982109, gi\|1... - gi\|4982109\|gb\|AAD36609.1\|AE001800_19 flagellar basal-body rod protein FlgG [Thermotoga maritima MSB8... gi\|7443089 - pir\|\|B72243 flagellar basal-body rod protein FlgG - Thermotoga maritima (strain MSB8) gi\|119886237, gi... - gi\|148270380\|ref\|YP_001244840.1\| flagellar basal-body rod protein FlgG [Thermotoga petrophila RKU-1]...	246.0	[0..1]	[260..1]
gi\|89211345, gi\|... - gi\|89211345\|ref\|ZP_01189714.1\| Protein of unknown function DUF1078 [Halothermothrix orenii H 168], g...	245.0	[0..1]	[261..1]
gi\|71484066, gi\|... - gi\|71550721\|ref\|ZP_00670810.1\| Flagellar basal body rod protein:Protein of unknown function DUF1078 ...	244.0	[0..1]	[261..1]
gi\|94427542, gi\|... - gi\|94500243\|ref\|ZP_01306776.1\| flagellar basal-body rod protein FlgG [Oceanobacter sp. RED65], gi\|94...	244.0	[0..1]	[260..1]
gi\|67677244, gi\|... - gi\|92114096\|ref\|YP_574024.1\| flagellar basal-body rod FlgG [Chromohalobacter salexigens DSM 3043], g...	243.0	[0..1]	[261..1]
gi\|58582198, gi\|... - gi\|58582198\|ref\|YP_201214.1\| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomon...	243.0	[0..1]	[260..81]
gi\|189018758, gi... - gi\|189026183\|ref\|YP_001933955.1\| flagellar basal-body rod protein [Treponema pallidum subsp. pallidu... gi\|15639944, gi\|... - gi\|3323281\|gb\|AAC65915.1\| flagellar basal-body rod protein (flgG-1) [Treponema pallidum subsp. palli... gi\|7443084 - pir\|\|C71259 probable flagellar basal-body rod protein (flgG-1) - syphilis spirochete	242.0	[0..1]	[261..1]
gi\|36785272, gi\|... - gi\|37525843\|ref\|NP_929187.1\| flagellar basal-body rod protein FlgG (Distal rod protein) [Photorhabdu...	241.0	[0..1]	[261..1]
gi\|30138210, gi\|... - gi\|30248324\|ref\|NP_840394.1\| flagellar basal body rod protein FlgG [Nitrosomonas europaea ATCC 19718...	241.0	[0..1]	[261..1]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHPALWISKT GLDAQQTDIS VISNNVANAS TVGYKKSRAV FEDLLYQTVN QAGGISASNT  60
   61 KLPNGLNIGA GTKVVATQKM FTQGNMLTT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.507	N/A	N/A	a.29.8	Description not found.
View	Download	0.492	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.479	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.470	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.463	N/A	N/A	a.60.14	Description not found.
View	Download	0.463	N/A	N/A	a.29.8	Description not found.
View	Download	0.457	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.401	N/A	N/A	f.17.1	F1F0 ATP synthase subunit C
View	Download	0.400	N/A	N/A	a.74.1	Cyclin-like

Predicted Domain #2

Region A:
Residues: [90-262]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DNSLDLMIEG PGFFEIQLPD GTTAYTRNGQ FTLDDTGQIV TPGSGYVLQP PITIPEDATS  60
   61 ITVSAEGEVS VKTPGAAENQ VVGQLSMTDF INPSGLDPMG QNLYTETGAS GTPIQGTASL 120
  121 DGMGAIRQGA LETSNVNVTE ELVNLIESQR IYEMNSKVIS AVDQMLAYVN QNL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.045757
Match:	1wlgA
Description:	Crystal structure of FlgE31, a major fragment of the hook protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits