YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374751, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	403 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374751, gi|....

Description	E-value	Query Range	Subject Range
gi\|75820914, gi\|... - gi\|75820914\|ref\|ZP_00750952.1\| COG1344: Flagellin and related hook-associated proteins [Vibrio chole...	243.0	[0..3]	[397..28]
gi\|254845022, gi... - gi\|75831307\|ref\|ZP_00760572.1\| COG1344: Flagellin and related hook-associated proteins [Vibrio chole... gi\|75816976 - gi\|75816976\|ref\|ZP_00747432.1\| COG1344: Flagellin and related hook-associated proteins [Vibrio chole... gi\|75827483 - gi\|75827483\|ref\|ZP_00756918.1\| COG1344: Flagellin and related hook-associated proteins [Vibrio chole... tr\|C6YDS1\|C6YDS1... - Flagellin core protein A OS=Vibrio cholerae MO10 GN=VchoM_01463 PE=4 SV=1	242.0	[0..3]	[397..28]
gi\|75823907, gi\|... - gi\|75823907\|ref\|ZP_00753381.1\| COG1344: Flagellin and related hook-associated proteins [Vibrio chole...	241.0	[0..3]	[397..28]
gi\|2271022 - gi\|2271022\|gb\|AAC01552.1\| flagellin [Vibrio cholerae]	241.0	[0..3]	[397..5]
gi\|7443286 - pir\|\|D72335 flagellin - Thermotoga maritima (strain MSB8) gi\|15643521, gi\|... - gi\|4981286\|gb\|AAD35840.1\|AE001746_1 flagellin [Thermotoga maritima MSB8], gi\|15643521\|ref\|NP_228567....	241.0	[0..1]	[397..1]
FLAA_VIBCH - Flagellin A OS=Vibrio cholerae GN=flaA PE=3 SV=1 FLAA_VIBCH - Flagellin A OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=flaA PE=3 SV... gi\|229355239, gi... - gi\|229507734\|ref\|ZP_04397239.1\| flagellin protein FlaC [Vibrio cholerae BX 330286], gi\|229355239\|gb\|... gi\|227082312, gi... - gi\|227082312\|ref\|YP_002810863.1\| flagellin core protein A [Vibrio cholerae M66-2], gi\|227010200\|gb\|A... gi\|229607238, gi... - gi\|229607238\|ref\|YP_002877886.1\| flagellin protein FlaC [Vibrio cholerae MJ-1236], gi\|229369893\|gb\|A... gi\|229343896, gi... - gi\|229519207\|ref\|ZP_04408650.1\| flagellin protein FlaC [Vibrio cholerae RC9], gi\|229343896\|gb\|EEO088... gi\|121630984, gi... - gi\|121726531\|ref\|ZP_01679780.1\| flagellin core protein A [Vibrio cholerae V52], gi\|121630984\|gb\|EAX6... gi\|121549499, gi... - gi\|121586233\|ref\|ZP_01676023.1\| flagellin core protein A [Vibrio cholerae 2740-80], gi\|121549499\|gb\|... gi\|125619358 - gi\|125619358\|gb\|EAZ47887.1\| flagellin core protein A [Vibrio cholerae MO10] gi\|153221248, gi... - gi\|153221248\|ref\|ZP_01952263.1\| flagellin core protein A [Vibrio cholerae MAK 757], gi\|124119777\|gb\|... gi\|153820885, gi... - gi\|229512071\|ref\|ZP_04401550.1\| flagellin protein FlaC [Vibrio cholerae B33], gi\|229352036\|gb\|EEO169... gi\|153817119, gi... - gi\|153817119\|ref\|ZP_01969786.1\| flagellin core protein A [Vibrio cholerae NCTC 8457], gi\|126512387\|g... FLAA_VIBC3 - Flagellin A OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) GN=flaA ...	241.0	[0..3]	[397..5]
gi\|86146147, gi\|... - gi\|86146147\|ref\|ZP_01064473.1\| flagellin [Vibrio sp. MED222], gi\|85836094\|gb\|EAQ54226.1\| flagellin [...	238.0	[0..3]	[397..5]
gi\|50830958 - gi\|50830958\|gb\|AAT81644.1\| phase 1 flagellin [Salmonella enterica VII 40:z4,z24:--]	234.0	[0..3]	[397..5]
gi\|38050193 - gi\|38050193\|gb\|AAR10715.1\| phase 1 flagellin [Salmonella enterica]	233.0	[0..3]	[397..5]

Back

Predicted Domain #1

Region A:
Residues: [1-403]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLSTAQLFN QSITSVLQKQ TATSKVLEQL SSGKKVNTSG DDPVAALGID NLNQRNALVD  60
   61 QFMKNIDYAN NRLAVTESKL GSAEDLTGSI REQLMRAVNG TLSDSERQMI ADEMKDSLKE 120
  121 LLSLANSKDE SGNYLFSGFS TDKQPFAFDN STPPKIVYSG DSGVRDSLVQ SGVAIGTNIP 180
  181 GDQAFMKAPN GLGDYSVNYL ASQQGDFKVQ TAKIADQATY VADTYTFNFS DNGAGGVNLQ 240
  241 VLDSANNPVA NVTNFDATTP VSFNGIEVKI DGKPSAGDSF SMEPQSEVSI FDTISNAIAL 300
  301 IEDPNVANSP QGKAQLAQIL NNIDSGVNQM SSARSVAGNN LKTVERYKDT HTEEKVVNTS 360
  361 ALSLLEDLDY ASAITEFEKQ QLALNAVSNV FSKVGSVSLF DFI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.522879
Match:	1ucuA
Description:	R-type straight flagellar filament made of full-length flagellin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.15505977330425	bayes_pls_golite062009
protein binding	0.578968706056249	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: