YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374749, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	272 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374749, gi|....

Description	E-value	Query Range	Subject Range
FLA2_TREPH - Flagellar filament 33 kDa core protein OS=Treponema phagedenis PE=1 SV=2	253.0	[0..3]	[272..1]
gi\|158141737, gi... - gi\|158321538\|ref\|YP_001514045.1\| flagellin domain-containing protein [Alkaliphilus oremlandii OhILAs...	250.0	[0..3]	[272..1]
gi\|45657404, gi\|... - gi\|45657404\|ref\|YP_001490.1\| flagellin protein [Leptospira interrogans serovar Copenhageni str. Fioc...	249.0	[0..3]	[272..1]
gi\|116328165, gi... - gi\|116328165\|ref\|YP_797885.1\| endoflagellar filament core protein [Leptospira borgpetersenii serovar... gi\|116330890, gi... - gi\|116330890\|ref\|YP_800608.1\| endoflagellar filament core protein [Leptospira borgpetersenii serovar...	249.0	[0..3]	[272..1]
gi\|24196180, gi\|... - gi\|24215118\|ref\|NP_712599.1\| hook-associated protein, flagellin family [Leptospira interrogans serov...	248.0	[0..3]	[272..1]
gi\|125974722, gi... - gi\|67875271\|ref\|ZP_00504694.1\| Flagellin, C-terminal:Flagellin, N-terminal [Clostridium thermocellum... gi\|196252246, gi... - gi\|196252246\|ref\|ZP_03150907.1\| flagellin domain protein [Clostridium thermocellum DSM 4150], gi\|196...	247.0	[0..3]	[272..1]
gi\|49328874, gi\|... - gi\|49477318\|ref\|YP_035878.1\| flagellin [Bacillus thuringiensis serovar konkukian str. 97-27], gi\|493...	247.0	[0..3]	[272..1]
FLA_BACHD - Flagellin OS=Bacillus halodurans GN=hag PE=1 SV=1 gi\|216262, gi\|477025 - pir\|\|A47684 flagellin - Bacillus sp, gi\|216262\|dbj\|BAA00952.1\| flagellin [Bacillus sp. C125] FLA_BACHD - Flagellin OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN... gi\|216262\|dbj\|BA... - flagellin [Bacillus sp.]	247.0	[0..3]	[272..1]
gi\|150388630, gi... - gi\|77687392\|ref\|ZP_00802635.1\| Flagellin, C-terminal:Flagellin, N-terminal [Alkaliphilus metalliredi...	246.0	[0..3]	[272..1]
gi\|20807004, gi\|... - gi\|20807004\|ref\|NP_622175.1\| flagellin-like protein [Thermoanaerobacter tengcongensis MB4], gi\|20515... gi\|20807004 - ref\|NP_622175.1\| Flagellin and related hook-associated proteins [Thermoanaerobacter tengcongensis]	246.0	[0..3]	[272..1]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAITVNTNVT SLKAQKNLNT SASDLATSME RLSSGLRINS AKDDAAGLAI SNRLNSQVRG  60
   61 LEVGMRNAND AISIAQIAEG AMQEQTNMLQ RMRDLTVQSE NGANSSADLS ALKAEMDQLA 120
  121 NEIDEIGKTT AFGTTKLLAG GFSAGKNFQV GAQDGEDIKV TVKASNKSSL SVGSLGNTTS 180
  181 AARASSLKKI DAAIKTIDAQ R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.522879
Match:	1ucuA
Description:	R-type straight flagellar filament made of full-length flagellin
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [202-272]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADLGAIQNRL AHNISNSANT QANVADAKSR IVDVDFAKET SQMTKNQVLQ QTGSAMLAQA  60
   61 NQLPQVALSL L

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.12
Match:	1ucuA
Description:	R-type straight flagellar filament made of full-length flagellin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits