YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349403, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	112 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349403, gi|....

Description	E-value	Query Range	Subject Range
gi\|37199415, gi\|... - gi\|37680666\|ref\|NP_935275.1\| flagellar hook-basal body protein [Vibrio vulnificus YJ016], gi\|3719941...	113.0	[0..7]	[112..17]
gi\|91191629, gi\|... - gi\|91223543\|ref\|ZP_01258808.1\| flagellar hook-basal body protein FliE [Vibrio alginolyticus 12G01], ...	110.0	[0..7]	[112..23]
gi\|75856755, gi\|... - gi\|75856755\|ref\|ZP_00764378.1\| COG1677: Flagellar hook-basal body protein [Vibrio sp. Ex25], gi\|1161...	109.0	[0..7]	[112..23]
gi\|117919789, gi... - gi\|78686537\|ref\|ZP_00851303.1\| Flagellar hook-basal body complex protein FliE [Shewanella sp. ANA-3]...	108.0	[0..1]	[112..1]
gi\|153836964, gi... - gi\|153836964\|ref\|ZP_01989631.1\| flagellar hook-basal body complex protein (FliE) [Vibrio parahaemoly... gi\|28899024, gi\|... - gi\|28899024\|ref\|NP_798629.1\| flagellar hook-basal body protein FliE [Vibrio parahaemolyticus RIMD 22... gi\|28807243, gi\|... - gi\|7327275\|gb\|AAF59654.1\| FliE [Vibrio parahaemolyticus], gi\|28807243\|dbj\|BAC60513.1\| flagellar hook...	108.0	[0..10]	[112..1]
gi\|114046854, gi... - gi\|78689551\|ref\|ZP_00854211.1\| Flagellar hook-basal body complex protein FliE [Shewanella sp. MR-7],...	108.0	[0..1]	[112..1]
gi\|82495238, gi\|... - gi\|82495238\|ref\|ZP_00880815.1\| Flagellar hook-basal body complex protein FliE [Shewanella sp. MR-4],...	107.0	[0..1]	[112..1]
gi\|161486614 - gi\|161486614\|ref\|NP_935275.2\| flagellar hook-basal body protein FliE [Vibrio vulnificus YJ016] gi\|27365279, gi\|... - gi\|27365279\|ref\|NP_760807.1\| flagellar hook-basal body protein FliE [Vibrio vulnificus CMCP6], gi\|27...	106.0	[0..10]	[112..1]
gi\|58582223, gi\|... - gi\|58582223\|ref\|YP_201239.1\| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331], gi\|5842681...	106.0	[0..1]	[112..49]
gi\|9656685, gi\|1... - gi\|9656685\|gb\|AAF95279.1\| flagellar hook-basal body complex protein FliE [Vibrio cholerae O1 biovar ... gi\|11354923 - pir\|\|F82114 flagellar hook-basal body complex protein FliE VC2134 [imported] - Vibrio cholerae (stra... gi\|150422701, gi... - gi\|254291371\|ref\|ZP_04962164.1\| flagellar hook-basal body complex protein FliE [Vibrio cholerae AM-1... gi\|153828648, gi... - gi\|153828648\|ref\|ZP_01981315.1\| flagellar hook-basal body complex protein FliE [Vibrio cholerae 623-... gi\|121548940, gi... - gi\|121586773\|ref\|ZP_01676555.1\| flagellar hook-basal body complex protein FliE [Vibrio cholerae 2740... gi\|149740747, gi... - gi\|153825596\|ref\|ZP_01978263.1\| flagellar hook-basal body complex protein FliE [Vibrio cholerae MZO-... gi\|254844925, gi... - gi\|254849220\|ref\|ZP_05238570.1\| flagellar hook-basal body complex protein FliE [Vibrio cholerae MO10... gi\|227118580, gi... - gi\|227118580\|ref\|YP_002820476.1\| flagellar hook-basal body complex protein FliE [Vibrio cholerae O39... gi\|153213273, gi... - gi\|153213273\|ref\|ZP_01948685.1\| flagellar hook-basal body complex protein FliE [Vibrio cholerae 1587... gi\|121727197, gi... - gi\|121727197\|ref\|ZP_01680364.1\| flagellar hook-basal body complex protein FliE [Vibrio cholerae V52]... gi\|227082259, gi... - gi\|227082259\|ref\|YP_002810810.1\| flagellar hook-basal body complex protein FliE [Vibrio cholerae M66... gi\|124122811, gi... - gi\|153801634\|ref\|ZP_01956220.1\| flagellar hook-basal body complex protein FliE [Vibrio cholerae MZO-... gi\|124118082, gi... - gi\|153223616\|ref\|ZP_01953970.1\| flagellar hook-basal body complex protein FliE [Vibrio cholerae MAK ... gi\|153818994, gi... - gi\|153818994\|ref\|ZP_01971661.1\| flagellar hook-basal body complex protein FliE [Vibrio cholerae NCTC...	104.0	[0..5]	[112..2]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIGANSLLQ EMQSLKGEVT PSFGISPNNI VQQVNNTSGA DFGQLLSQAI GNVSGLQSTS  60
   61 SNLATRLDMG DTTVSLSDSV IAREKASVAF EATIQVRNKL VEAYKEIMSM PV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	20.920819
Match:	PF02049.9
Description:	No description for PF02049.9 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.986	N/A	N/A	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac
View	Download	0.985	N/A	N/A	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac
View	Download	0.982	N/A	N/A	a.7.1	Spectrin repeat
View	Download	0.981	N/A	N/A	a.7.1	Spectrin repeat
View	Download	0.975	N/A	N/A	a.7.12	Description not found.
View	Download	0.973	N/A	N/A	a.47.1	STAT
View	Download	0.967	N/A	N/A	a.2.7	tRNA-binding arm
View	Download	0.962	N/A	N/A	a.47.1	STAT
View	Download	0.956	N/A	N/A	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like
View	Download	0.938	N/A	N/A	a.47.2	t-snare proteins
View	Download	0.884	N/A	N/A	d.67.3	Ribosome recycling factor, RRF
View	Download	0.779	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain
View	Download	0.751	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain
View	Download	0.748	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain
View	Download	0.732	N/A	N/A	a.7.8	GAT domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits