YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349399, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	445 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349399, gi|....

Description	E-value	Query Range	Subject Range
gi\|77964179 - gi\|77964179\|gb\|ABB13424.1\| ATP synthase subunit alpha [Clostridium paradoxum]	600.0	[0..1]	[444..1]
ATPA_CARHZ - ATP synthase subunit alpha OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-...	598.0	[0..1]	[444..1]
ATPA_ALKOO - ATP synthase subunit alpha OS=Alkaliphilus oremlandii (strain OhILAs) GN=atpA PE=3 SV=1	598.0	[0..1]	[444..1]
gi\|33329385, gi\|... - gi\|33329385\|gb\|AAQ10088.1\| ATP synthase subunit alpha [Bacillus sp. TA2.A1], gi\|158430152\|pdb\|2QE7\|C...	598.0	[0..1]	[442..1]
ATPA_ALKMQ - ATP synthase subunit alpha OS=Alkaliphilus metalliredigens (strain QYMF) GN=atpA PE=3 SV=1	595.0	[0..1]	[444..1]
ATPA_CLOPS - ATP synthase subunit alpha OS=Clostridium perfringens (strain SM101 / Type A) GN=atpA PE=3 SV=1	594.0	[0..1]	[439..1]
ATPA_CLOPE - ATP synthase subunit alpha OS=Clostridium perfringens (strain 13 / Type A) GN=atpA PE=3 SV=1 gi\|169344183, gi... - gi\|169344183\|ref\|ZP_02865165.1\| ATP synthase F1, alpha subunit [Clostridium perfringens C str. JGS14... gi\|182382309, gi... - gi\|182382309\|gb\|EDT79788.1\| ATP synthase F1, alpha subunit [Clostridium perfringens NCTC 8239], gi\|1... gi\|170714802, gi... - gi\|170714802\|gb\|EDT26984.1\| ATP synthase F1, alpha subunit [Clostridium perfringens CPE str. F4969],... ATPA_CLOP1 - ATP synthase subunit alpha OS=Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIM... gi\|170711744, gi... - gi\|170711744\|gb\|EDT23926.1\| ATP synthase F1, alpha subunit [Clostridium perfringens B str. ATCC 3626... gi\|168205574, gi... - gi\|170662849\|gb\|EDT15532.1\| ATP synthase F1, alpha subunit [Clostridium perfringens E str. JGS1987],... ATPA_CLOPE - ATP synthase subunit alpha OS=Clostridium perfringens GN=atpA PE=3 SV=1	593.0	[0..1]	[439..1]
ATPA_MOOTA - ATP synthase subunit alpha OS=Moorella thermoacetica (strain ATCC 39073) GN=atpA PE=1 SV=1	591.0	[0..1]	[439..1]
ATPA_HALOH - ATP synthase subunit alpha OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=atpA PE=...	590.0	[0..1]	[442..1]
ATPA_MARMM - ATP synthase subunit alpha OS=Maricaulis maris (strain MCS10) GN=atpA PE=3 SV=1	588.0	[0..1]	[444..1]

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Predicted Domain #1

Region A:
Residues: [1-445]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHNRRHQLQN KLNHYIDKVP PFRAVASGQL VRVVGLTLEA SGCRAPVGSL CSIETMVGEL  60
   61 IAEVVGFDDE LLYLMPIEEL RGVLPGARVV PLGEQAGLNV GLSLLGRVLD GNGVPLDGLG 120
  121 ALSTEQQAPR HSNAINPLSR RAITEPLDVG VRAINAMLTV GKGQRMGLFA GSGVGKSVLL 180
  181 GMMTRGTTAD IIVVGLVGER GREVKEFIEE ILGEKGRARS VVVAAPADTS PLMRLRACET 240
  241 STRIAEYFRD LGYNVLLLMD SLTRYAQAQR EIALAVGEPP ATKGYPPSVF AKLPRLVERA 300
  301 GNGGPGQGSI TAFYTVLTEG DDQQDPIADA SRAILDGHIV LSRSLADSGH YPAIDIEASI 360
  361 SRVAPMVISN EHLEAMRRVK QTYSLYQQNK DLISIGAYAQ GSDPRIDNAI RLQPAMNAFL 420
  421 RQTMRDAFSF ADSQVMLGQL AAQCK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	136.0
Match:	2dpyA
Description:	No description for 2dpyA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits